howto/Tabs.md

 The `Chromatin 3D Visualizer` application contains multiple `Tabs` which represent
 windows with a specific function. This enables the user to access multiple features
-in a dedicated view.
+in a dedicated view. All the tabs of the application can be accessed and turned off again
+via the `Window` menu entry.
 
 ## The Tabs
 
 There are a few available tabs in the application. The following list provides
 a brief overview of the available tabs and their function:
+
+### Viewer
+
+This is the main view of the application. In this window you can see the trajectory
+that is currently loaded. Via this view, the camera of the application can be controlled.
+This includes rotations, zooming, moving the camera and so on.
+<br>
+This view will be grayed out, when no trajectory has been loaded and only become
+available, once a trajectory has been selected and loaded.
+
+### PBC
+
+This view contains the settings for `PBC-Trajectories` alongside some statistics
+obtained from the config loaded into the application.
+<br>
+The view contains multiple controls that influence the visualisation of the
+trajectory:
+<br><br>
+**PBC-Mode and Container**
+<br>
+These settings control whether the loaded trajectory will be displayed in PBC-mode 
+and whether the PBC-container will be displayed in the main view. The additional
+`Color` property directly controls the color of the container, if it is displayed in
+the view.
+<br><br>
+**Microscope Slide**
+<br>
+The `Microscope Slide` controls influence whether a slide will be displayed 
+in the main viewer window. Similarly to the PBC container, enabling the `Box`
+of the slide, will show a visualisation of the box in the main view. That view's
+color can also be changed. With the `Size` and `Index` controls, the slide
+can be increased in size and moved through the container, changing what is being
+included and displayed.
+
+### Fiber Information
+
+This view contains information about the fiber that has been loaded into the application.
+
+### Cohesin / CTCF
+
+This view contains information about hte `Cohesin` properties of the loaded fiber.
+
+### View Settings
+
+This tab describes certain settings that directly influence the visualisation
+of the fiber on display. It is split into two distinct control groups:
+<br><br>
+**Colors**
+<br>
+This control directly influences the color of fiber-elements. For example, the 
+color for the entirety of the nucleosomes can be set.
+<br><br>
+**Visualization**
+<br>
+This control group allows activating or hiding helper elements in the main view and
+influencing some visual properties of the displayed fiber (for example the texture).
+
+### Configuration Player
+
+The configuration player controls which configuration will be displayed in the main
+view of the application. Through the tab, specific configurations can be selected
+or the autoplay-feature can be used, to cycle through every available config.
+<br>
+The tab also allows for other smaller settings to influence the display of and cycling
+through the configurations.
+
+### Camera Settings
+
+The camera settings mainly control the camera in the main view of the application. 
+<br><br>
+**Controls**
+<br>
+This control allows switching between two different camera modes:
+
+* `First Person Perspective`, in this mode, the camera can be moved around freely
+* `Rotate Around The Center`, with this mode, the camera is locked to the center of the fiber
+
+**Camera**
+<br><br>
+Under the `camera` portion, there are two distinct controls:
+
+* `Set Camera` allows setting different camera behaviours for when the configuration in the main view is changed
+  * `None` this will behave the same way as `Keep Distance to Center`
+  * `Set to Center Mass` will place the camera at the origin of the fiber whenever you change configuration
+  * `Keep Distance to Center` will keep the camera at its current position whenever you change configuration
+* `Find The Fiber` is a button that will center the camera of the view on the fiber
+
+### Nucleosomes Explorer
+
+This tab contains information about every nucleosome of the fiber loaded into the application.
+Through this view, every nucleosome can be selected and a custom color can be assigned.
+
+### DNA Explorer
+
+This tab contains information about the DNA around the nucleosomes of the fiber loaded into
+the application. Through this tab, every piece of DNA (excluding `Linker DNA`) can
+be assigned a custom color.
+
+### Linker DNA Explorer
+
+This tab contains information about the Linker DNA of the fiber loaded into
+the application. Through this tab, every piece of Linker DNA can be assigned a custom color.
+
+### Cohesin/CTCF Explorer
+
+Similarly to the other explorer tabs, this tab contains information about the 
+`Cohesin` / `CTCF` of the fiber loaded into the application. Through this tab,
+every `Cohesin` / `CTCF` element can be assigned a custom color.
+
+### Tool: Color Gradient
+
+This tool allows coloring every bead of the fiber that is currently loaded into the 
+application in a gradient based on two colors. Additionally, you can set the beginning
+bead id and the end bead id, which determines, which beads will be included in coloring.
+The same applies to the type of bead to be colored, where the different available types 
+can be included or excluded.
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