howto/Tabs.md

@@ -16,6 +16,8 @@ This includes rotations, zooming, moving the camera and so on.
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 This view will be grayed out, when no trajectory has been loaded and only become
 available, once a trajectory has been selected and loaded.
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+<br />
 
 ### PBC
 
@@ -24,68 +26,78 @@ obtained from the config loaded into the application.
 <br>
 The view contains multiple controls that influence the visualisation of the
 trajectory:
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 **PBC-Mode and Container**
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 These settings control whether the loaded trajectory will be displayed in PBC-mode 
 and whether the PBC-container will be displayed in the main view. The additional
 `Color` property directly controls the color of the container, if it is displayed in
 the view.
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 **Microscope Slide**
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 The `Microscope Slide` controls influence whether a slide will be displayed 
 in the main viewer window. Similarly to the PBC container, enabling the `Box`
 of the slide, will show a visualisation of the box in the main view. That view's
 color can also be changed. With the `Size` and `Index` controls, the slide
 can be increased in size and moved through the container, changing what is being
 included and displayed.
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+<br />
 
 ### Fiber Information
 
 This view contains information about the fiber that has been loaded into the application.
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 ### Cohesin / CTCF
 
 This view contains information about hte `Cohesin` properties of the loaded fiber.
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 ### View Settings
 
 This tab describes certain settings that directly influence the visualisation
 of the fiber on display. It is split into two distinct control groups:
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 **Colors**
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 This control directly influences the color of fiber-elements. For example, the 
 color for the entirety of the nucleosomes can be set.
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 **Visualization**
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 This control group allows activating or hiding helper elements in the main view and
 influencing some visual properties of the displayed fiber (for example the texture).
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 ### Configuration Player
 
 The configuration player controls which configuration will be displayed in the main
 view of the application. Through the tab, specific configurations can be selected
 or the autoplay-feature can be used, to cycle through every available config.
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 The tab also allows for other smaller settings to influence the display of and cycling
 through the configurations.
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 ### Camera Settings
 
 The camera settings mainly control the camera in the main view of the application. 
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 **Controls**
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 This control allows switching between two different camera modes:
 
 * `First Person Perspective`, in this mode, the camera can be moved around freely
 * `Rotate Around The Center`, with this mode, the camera is locked to the center of the fiber
 
 **Camera**
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 Under the `camera` portion, there are two distinct controls:
 
 * `Set Camera` allows setting different camera behaviours for when the configuration in the main view is changed
@@ -93,28 +105,38 @@ Under the `camera` portion, there are two distinct controls:
   * `Set to Center Mass` will place the camera at the origin of the fiber whenever you change configuration
   * `Keep Distance to Center` will keep the camera at its current position whenever you change configuration
 * `Find The Fiber` is a button that will center the camera of the view on the fiber
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+  <br />
 
 ### Nucleosomes Explorer
 
 This tab contains information about every nucleosome of the fiber loaded into the application.
 Through this view, every nucleosome can be selected and a custom color can be assigned.
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 ### DNA Explorer
 
 This tab contains information about the DNA around the nucleosomes of the fiber loaded into
 the application. Through this tab, every piece of DNA (excluding `Linker DNA`) can
 be assigned a custom color.
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 ### Linker DNA Explorer
 
 This tab contains information about the Linker DNA of the fiber loaded into
 the application. Through this tab, every piece of Linker DNA can be assigned a custom color.
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 ### Cohesin/CTCF Explorer
 
 Similarly to the other explorer tabs, this tab contains information about the 
 `Cohesin` / `CTCF` of the fiber loaded into the application. Through this tab,
 every `Cohesin` / `CTCF` element can be assigned a custom color.
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 ### Tool: Color Gradient