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votca
csg
Commits
8cfa45eb
Commit
8cfa45eb
authored
Sep 28, 2019
by
Christoph Junghans
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update_imc.sh: remove pack and unpack
parent
33a9b558
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share/scripts/inverse/update_imc.sh
share/scripts/inverse/update_imc.sh
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share/scripts/inverse/update_imc.sh
View file @
8cfa45eb
...
...
@@ -36,13 +36,10 @@ imc_groups=$(csg_get_interaction_property --all inverse.imc.group)
imc_groups
=
$(
remove_duplicate
$imc_groups
)
[[
-z
${
imc_groups
}
]]
&&
die
"
${
0
##*/
}
: No imc groups defined"
for
group
in
$imc_groups
;
do
# currently this is a hack! need to create combined array
reg
=
"
$(
csg_get_property cg.inverse.imc.
${
group
}
.reg
${
default_reg
}
)
"
#filter me away
is_num
"
${
reg
}
"
||
die
"
${
0
##*/
}
: value of cg.inverse.imc.
${
group
}
.reg should be a number"
msg
"solving linear equations for imc group '
$group
' (regularization
${
reg
}
)"
critical csg_imcrepack
--in
${
group
}
--out
${
group
}
.packed
critical csg_imc_solve
--imcfile
"
${
group
}
.packed.imc"
--gmcfile
"
${
group
}
.packed.gmc"
--regularization
"
${
reg
}
"
--outputfile
"
${
group
}
.packed.sol"
critical csg_imcrepack
--in
${
group
}
.packed
--unpack
${
group
}
.packed.sol
critical csg_imc_solve
--imcfile
"
${
group
}
.imc"
--gmcfile
"
${
group
}
.gmc"
--idxfile
"
${
group
}
.idx"
--regularization
"
${
reg
}
"
--outputfile
"
${
group
}
.sol"
done
for_all
"non-bonded bonded"
do_external imc purify
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