Commit d76da664 authored by cev's avatar cev

Doc update (Libs).

parent a21be243
......@@ -42,11 +42,11 @@ The :mod:`miRmap` library has the following requirements:
- For the thermodynamic features, the `Vienna RNA <http://www.tbi.univie.ac.at/RNA>`_ library is required.
Download the latest `Vienna package tarball <http://www.tbi.univie.ac.at/RNA/ViennaRNA-1.8.5.tar.gz>`_, then do:
Download the latest `Vienna RNA`_ tarball (Versions 1.8.x were successfully tested), then do:
::
cd ViennaRNA-1.8.5
cd ViennaRNA-<version>
./configure --without-kinfold --without-forester --without-svm --without-perl
make
gcc -shared -Wl,-O2 -o lib/libRNAvienna.so `find lib/ -name "*.o"` -lm
......@@ -64,12 +64,13 @@ The :mod:`miRmap` library has the following requirements:
make CLAPACKPATH=../CLAPACK-3.2.1 sharedlib
- For the *P.over exact* feature, the `Spatt <http://stat.genopole.cnrs.fr/spatt>`_ library is required (You will need a working copy of `CMake <http://www.cmake.org>`_ on your system).
- For the *P.over exact* feature, the `Spatt <http://www.mi.parisdescartes.fr/~nuel/spatt>`_ library is required (You will need a working copy of `CMake <http://www.cmake.org>`_ on your system).
Download the latest Spatt_ tarball (Version 2.0 was successfully tested), then do:
::
git clone https://bitbucket.org/vejnar/spatt.git
cd spatt
cd spatt-<version>
mkdir build
cd build
cmake -DWITH_SHARED_LIB=ON ..
......@@ -79,9 +80,9 @@ From the directory you compiled the C libraries:
::
mv libspatt2/libspatt2.so mirmap/libs/default
mv ViennaRNA-1.8.5/lib/libRNAvienna.so mirmap/libs/default
mv phast2/lib/sharedlib/libphast.so mirmap/libs/default
mv spatt-<version>/libspatt2/libspatt2.so mirmap/libs/default
mv ViennaRNA-<version>/lib/libRNAvienna.so mirmap/libs/default
mv phast/lib/sharedlib/libphast.so mirmap/libs/default
Usage
=====
......
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