Attached is an example of an SBML file and from it generated CD file which shows a slightly different result (some of the lines which are orthogonal in SBML are not orthogonal in CD (at least in the way how they are interpreted by CellDesigner)). [BIOMD0000000002_url_sbo-cc_0--from--R-MMU-8956320-Nucleobase_biosynthesis-Mus_musculus_fixed-cc1-tmp_order_0-tgt-ddup_False_tmp-ddup_False.svg](/uploads/da5e3583ec20ed8dc09ea31d89f7c232/BIOMD0000000002_url_sbo-cc_0--from--R-MMU-8956320-Nucleobase_biosynthesis-Mus_musculus_fixed-cc1-tmp_order_0-tgt-ddup_False_tmp-ddup_False.svg) [BIOMD0000000002_url_sbo-cc_0--from--R-MMU-8956320-Nucleobase_biosynthesis-Mus_musculus_fixed-cc1-tmp_order_0-tgt-ddup_False_tmp-ddup_False-cd.xml](/uploads/356fd7dca0d41c392ad16257e9f9c4cc/BIOMD0000000002_url_sbo-cc_0--from--R-MMU-8956320-Nucleobase_biosynthesis-Mus_musculus_fixed-cc1-tmp_order_0-tgt-ddup_False_tmp-ddup_False-cd.xml) [BIOMD0000000002_url_sbo-cc_0--from--R-MMU-8956320-Nucleobase_biosynthesis-Mus_musculus_fixed-cc1-tmp_order_0-tgt-ddup_False_tmp-ddup_False.xml](/uploads/74479d46b96ee4b519f1b8cc1e1db6ac/BIOMD0000000002_url_sbo-cc_0--from--R-MMU-8956320-Nucleobase_biosynthesis-Mus_musculus_fixed-cc1-tmp_order_0-tgt-ddup_False_tmp-ddup_False.xml)