real coverage?

I am trying to understand, what is the real coverage of our test, and found out, that if we run test like

pytest --cov --cov-report=html --cov-append

and

coverage run -a -m pytest
coverage html

we get different coverage:

file pytest --cov coverage run
PyTango/init.py 89% 0%
tango/init.py 0% 100%
tango/api_util.py 0% 94%
tango/asyncio.py 100% 100%
tango/asyncio_executor.py 76% 21%
tango/attr_data.py 93% 35%
tango/attribute_proxy.py 7% 35%
tango/auto_monitor.py 0% 80%
tango/base_types.py 1% 56%
tango/callback.py 0% 93%
tango/client.py 22% 0%
tango/codec.py 11% 11%
tango/connection.py 33% 35%
tango/databaseds/init.py 100% 100%
tango/databaseds/database.py 28% 0%
tango/databaseds/db_access/init.py 100% 100%
tango/databaseds/db_access/sqlite3.py 0% 0%
tango/databaseds/db_errors.py 100% 0%
tango/db.py 20% 46%
tango/device_attribute.py 0% 52%
tango/device_class.py 44% 20%
tango/device_data.py 0% 91%
tango/device_proxy.py 37% 22%
tango/device_server.py 39% 38%
tango/encoded_attribute.py 33% 12%
tango/exception.py 0% 74%
tango/futures.py 100% 100%
tango/futures_executor.py 93% 0%
tango/gevent.py 84% 84%
tango/gevent_executor.py 93% 28%
tango/globals.py 48% 18%
tango/green.py 56% 34%
tango/group.py 22% 49%
tango/group_reply.py 18% 59%
tango/group_reply_list.py 30% 50%
tango/log4tango.py 6% 22%
tango/pipe.py 0% 22%
tango/pipe_data.py 0% 8%
tango/pytango_init.py 0% 98%
tango/pytango_pprint.py 30% 59%
tango/pyutil.py 34% 33%
tango/release.py 0% 100%
tango/server.py 71% 42%
tango/tango_numpy.py 46% 0%
tango/tango_object.py 13% 13%
tango/test_context.py 82% 14%
tango/test_utils.py 94% 39%
tango/time_val.py 4% 49%
tango/utils.py 31% 24%
tests/conftest.py 64% 33%
tests/test_api_util.py 100% 43%
tests/test_async.py 90% 25%
tests/test_attribute_proxy.py 94% 31%
tests/test_client.py 89% 16%
tests/test_database.py 93% 47%
tests/test_databaseds.py 89% 26%
tests/test_event.py 79% 17%
tests/test_server.py 94% 5%
tests/test_telemetry.py 23% 23%
tests/test_test_context.py 95% 26%
tests/test_utils.py 98% 30%
tests/test_zzz_deprecated_pytango_module.py 100% 33%
tests/valgrind/memory_test.py 31% 31%

One of the main difference: pytest --cov does not cover init.py and all sub-calls, while coverage run - does not cover tests....

How we get real coverage?