Flux kustomize-controller unable to update HelmRelease having traces of a manager using a previous apiVersion (problem potentially exists with other custom resources)
I observed this error in my dev environment (cluster nearly 500 days old) when trying the dev branch from !6897:
on `alertmanager-config` Kustomization, in status:
```
status:
conditions:
- lastTransitionTime: "2026-03-18T09:40:04Z"
message: Detecting drift for revision revisit-force-reconcile@sha1:b9f286f12bd9d812f11edc12da6088b8bd4f8117
with a timeout of 30s
observedGeneration: 876
reason: ProgressingWithRetry
status: "True"
type: Reconciling
- lastTransitionTime: "2026-03-18T09:40:04Z"
message: |
HelmRelease/sylva-system/alertmanager-config dry-run failed: failed to prune fields: failed add back owned items: failed to convert merged object at version helm.toolkit.fluxcd.io/v2beta2: errors:
.spec.install.strategy: field not declared in schema
.spec.upgrade.strategy: field not declared in schema
observedGeneration: 876
reason: ReconciliationFailed
status: "False"
type: Ready
```
The problem is non-obvious because:
* my MR is introducing the use of field added to HelmReleases in Flux 2.7, on the v2 apiVersion
* the Kustomization is producing manifests in that version (we've had v2 for a long time in Sylva) ;`flux build kustomization alertmanager-config --path ./kustomize-units/helmrelease-generic` confirms that the Kustomization produces a v2.
**The mention of `v2beta2` HelmRelease in the error is particularly surprising.**
Looking closer, the HelmRelease has a trace of v2beta2 in fieldManagers:
```yaml
apiVersion: helm.toolkit.fluxcd.io/v2
kind: HelmRelease
metadata:
annotations:
reconcile.fluxcd.io/forceAt: "2025-07-31T10:02:11.571821656+02:00"
reconcile.fluxcd.io/requestedAt: 2026-03-17T09:01:28
sylva-units-helm-revision: "890"
sylvactl/reconcileCompletedAt.579.xGyftc: 2026-03-11T14:28:11
sylvactl/reconcileCompletedAt.580.W9JAml: 2026-03-12T08:29:19
sylvactl/reconcileCompletedAt.581.sGvych: 2026-03-13T14:11:40
sylvactl/reconcileCompletedAt.583.zaidgM: 2026-03-16T12:46:52
sylvactl/reconcileCompletedAt.584.LNBb9z: 2026-03-17T09:01:29
sylvactl/reconcileStartedAt.579.xGyftc: 2026-03-11T14:28:10
sylvactl/reconcileStartedAt.580.W9JAml: 2026-03-12T08:29:19
sylvactl/reconcileStartedAt.581.sGvych: 2026-03-13T14:11:40
sylvactl/reconcileStartedAt.583.zaidgM: 2026-03-16T12:46:52
sylvactl/reconcileStartedAt.584.LNBb9z: 2026-03-17T09:01:28
creationTimestamp: "2024-11-12T15:36:31Z"
#...
managedFields:
# ...
- apiVersion: helm.toolkit.fluxcd.io/v2beta2
fieldsType: FieldsV1
fieldsV1:
f:metadata:
f:annotations: {}
manager: sylvactl
operation: Update
time: "2025-03-20T09:03:36Z"
# ...
- apiVersion: helm.toolkit.fluxcd.io/v2
fieldsType: FieldsV1
fieldsV1:
f:metadata:
f:annotations:
f:reconcile.fluxcd.io/requestedAt: {}
f:sylvactl/reconcileCompletedAt.579.xGyftc: {}
f:sylvactl/reconcileCompletedAt.580.W9JAml: {}
f:sylvactl/reconcileCompletedAt.581.sGvych: {}
f:sylvactl/reconcileCompletedAt.583.zaidgM: {}
f:sylvactl/reconcileCompletedAt.584.LNBb9z: {}
f:sylvactl/reconcileStartedAt.579.xGyftc: {}
f:sylvactl/reconcileStartedAt.580.W9JAml: {}
f:sylvactl/reconcileStartedAt.581.sGvych: {}
f:sylvactl/reconcileStartedAt.583.zaidgM: {}
f:sylvactl/reconcileStartedAt.584.LNBb9z: {}
manager: sylvactl
operation: Update
time: "2026-03-17T09:01:29Z"
```
We have in fact twice the `sylvactl` field manager, once from a long time ago with the old `apiVersion: v2beta2` and a recent one with the new one.
And it seems that the SSA logic on which the kustomize-controller relies does not support this combination well.
I tried to see if running `flux migrate` would solve the problem, and it did.
After running it:
* no trace of the old field manager (presumably merged with the new one)
* the Kustomization reconciled the HelmRelease successfully
**Conclusions**:
* we should run `flux migrate` as part of a `kube-job` after flux-system major upgrade
* we may have the same issue when the kustomize-controller tries to update any other CR that would be in that situation where an old field manager remains using an older apiVersion
issue
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