Commit bd62986e authored by Markus Gonser's avatar Markus Gonser

Merge branch 'master' of https://github.com/svaksha/Julia.jl

parents 14513579 89f5eb3c
......@@ -160,7 +160,7 @@
+ [DeepQLearning.jl](https://github.com/Andy-P/DeepQLearning.jl) :: An implementation of DeepMind's Deep Q Learning algorithm described in _Playing Atari with Deep Reinforcement Learning_.
+ [Flux.jl](https://github.com/FluxML/Flux.jl) :: A library for machine learning implemented in Julia. Documentation: https://fluxml.ai/Flux.jl/stable/
+ [model-zoo](https://github.com/FluxML/model-zoo) :: A repository containing various demonstrations of the Flux machine learning library that can be freely used as a starting point for your own models.
+ [model-zoo](https://github.com/FluxML/model-zoo) :: A repository containing various demonstrations of the Flux machine learning library that can be freely used as a starting point for your own models.
+ [ReinforcementLearning.jl](https://github.com/jbrea/ReinforcementLearning.jl) by @jbrea :: A Reinforcement Learning package.
+ [ReinforcementLearning.jl](https://github.com/benhamner/ReinforcementLearning.jl) by @benhamner :: A Reinforcement Learning package.
+ [ReinforcementLearning.jl](https://github.com/JuliaReinforcementLearning/ReinforcementLearning.jl) by @JuliaReinforcementLearning :: A package for reinforcement learning research in Julia.
......@@ -169,6 +169,7 @@
----
# SPEECH RECOGNITION
+ [JuliaTorch](https://github.com/boathit/JuliaTorch) :: Using PyTorch in Julia Language via PyCall.
+ [MelGeneralizedCepstrums.jl](https://github.com/r9y9/MelGeneralizedCepstrums.jl) :: It provides a `mel generalized cepstrum` analysis for spectrum envelope estimation, which includes linear predicition, mel-cepstrum, generalized cepstrum and mel-generalized cepstrum analysis for Julia.
+ [MFCC.jl](https://github.com/JuliaDSP/MFCC.jl) :: Standard Mel Frequency Cepstral Coefficients feature extraction for speech analysis.
+ [SpeechBase.jl](https://github.com/r9y9/SpeechBase.jl).
......@@ -221,7 +222,7 @@
+ [SumProductNetworks.jl](https://github.com/trappmartin/SumProductNetworks.jl) :: Sum-Product Networks (deep probabilistic networks) package in Julia.
###### Resources
+ Blog post on '[Chess position evaluation with convolutional neural network in Julia](http://int8.io/chess-position-evaluation-with-convolutional-neural-networks-in-julia/)'.
+ Blog post on '[Chess position evaluation with convolutional neural networks](http://int8.io/chess-position-evaluation-with-convolutional-neural-networks-in-julia/)' in Julia.
**Bioinformatics, genomics, agriculture, food science, medicine, genetic engineering, etc...**
+ [API's](#api's)
+ [BIOINFORMATICS](#bioinformatics)
+ [BIOMEDICINE](#biomedicine)
+ [BIOSTATISTICS](#bioinformatics)
......@@ -21,6 +22,12 @@
----
# API's
+ [BioServices.jl](https://github.com/BioJulia/BioServices.jl) :: Julia interface to APIs for various bio-related web services
----
# BIOINFORMATICS
+ [Bio.jl](https://github.com/BioJulia/Bio.jl) :: Bioinformatics and Computational Biology Infrastructure for Julia. Wiki documentation of [core features](https://github.com/BioJulia/Bio.jl/wiki/core-features)
+ [Circuitscape.jl](https://github.com/tanmaykm/Circuitscape.jl) :: The Julia implementation of the [Circuitscape lib in Python](http://www.circuitscape.org/) that uses electronic circuit theory to solve problems in landscape ecology.
......@@ -70,6 +77,7 @@
----
# GENOMICS
+ [BioAlignments.jl](https://github.com/BioJulia/BioAlignments.jl) :: Sequence alignment tools in BioJulia
+ [BioArgParse.jl](https://github.com/Ward9250/BioArgParse.jl) :: Extension to 'ArgParse.jl', enabling parsing of command line parameters to types in 'Bio.jl'.
+ [BioFeatures.jl](https://github.com/nw11/BioFeatures.jl).
+ [BioSeq.jl](https://github.com/BioJulia/BioSeq.jl) :: Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences.
......@@ -79,12 +87,14 @@
+ [FastaIO.jl](https://github.com/carlobaldassi/FastaIO.jl) :: Utilities to read/write FASTA format files in Julia.
+ [FusionDirect.jl](https://github.com/OpenGene/FusionDirect.jl) :: Detect gene fusion directly from raw fastq files.
+ [GenomeAnnotations.jl](https://github.com/nw11/GenomeAnnotations.jl) :: Manage Local Genome Annotation files.
+ [GenomeGraphs.jl](https://github.com/BioJulia/GenomeGraphs.jl) :: A modern genomics framework for julia
+ [GenomicTiles.jl](https://github.com/nw11/GenomicTiles.jl)
+ [Gillespie.jl](https://github.com/sdwfrost/Gillespie.jl) :: Stochastic Gillespie-type simulations using Julia.
+ [gtf-parse-off](https://github.com/dcjones/gtf-parse-off) :: Experiments with parsing gene transfer format (GTF).
+ [HTSLIB.jl](https://github.com/OpenGene/HTSLIB.jl) :: A julia wrapper of htslib for accessing common high-throughput sequencing data file formats such as BAM/SAM files.
+ [HyperNEAT.jl](https://github.com/kzahedi/HyperNEAT.jl) :: A generative encoding for evolving ANN based on the NeuroEvolution of Augmented Topologies (NEAT) algorithm for evolutionary computation.
+ [IntervalTrees.jl](https://github.com/BioJulia/IntervalTrees.jl) :: A data structure for efficient manipulation of sets of intervals.
+ [MerCounting.jl](https://github.com/BioJulia/MerCounting.jl) :: Kmer counting algorithms and count-data utilities for the BioJulia framework
+ [LCS.jl](https://github.com/WestleyArgentum/LCS.jl) :: A package for finding longest common and longest contiguous subsequences.
+ [OBC.jl](https://github.com/binarybana/OBC.jl) :: Optimal Bayesian classification for RNA-Seq data.
+ [OpenGene.jl](https://github.com/OpenGene/OpenGene.jl) :: OpenGene core library in Julia.
......@@ -119,7 +129,7 @@ __Genome Wide Association Study (GWAS)__
###### Resources
+ Wikipedia's [list of RNA-Seq bioinformatics tools](http://en.wikipedia.org/wiki/List_of_RNA-Seq_bioinformatics_tools), not many of which are in Julia but depending on the language, they may have an API.
+ [Data Analysis for Genomics](https://genomicsclass.github.io/book/) : This is entirely in R-language but learners can use it to learn Julia.
+ [BioTutorials](https://github.com/BioJulia/BioTutorials) : Tutorial Notebooks of BioJulia
## Molecular Biology
+ [EvoDuplexes.jl](https://github.com/timbitz/EvoDuplexes.jl) :: A Julia package to fold all local and long-range RNA duplexes.
......
# Chemistry in Julia!
+ [Chemistry Input Output](#chemistry-input-output)
+ [Chemical Properties & Resources](#chemical-properties-&-resources)
+ [General](#general)
+ [Thermochemistry](#thermochemistry)
+ [General Resources](#general-resources)
+ [Chemical File Formats and Input Output](#chemical-file-formats-and-input-output)
+ [Biochemistry](#biochemistry)
+ [Chemometrics](#chemometrics)
+ [Chemoinformatics](#chemoinformatics)
+ [Computational Tools](#computational-tools)
+ [Material Science](#material-science)
+ [Reaction Kinetics](#reaction-kinetics)
+ [Chemometrics](#chemometrics)
+ [Physical Chemistry](#physical-chemistry)
+ [Colloidal Chemistry](#colloidal-chemistry)
+ [Solid State Chemistry](#solid-state-chemistry)
+ [Quantum Chemistry](#quantum-chemistry)
- [Reaction Kinetics](#reaction-kinetics)
- [Thermochemistry](#thermochemistry)
+ [Simulation Methods](#simulation-methods)
+ [Solid State Chemistry and Materials Science](#solid-state-chemistry-and-materials-science)
+ [Uncategorized](#uncategorized)
----
## Chemistry Input Output
+ [Chemfiles.jl](https://github.com/chemfiles/Chemfiles.jl) :: A Julia binding for the [Chemfiles](https://github.com/chemfiles/chemfiles) library for reading and writing chemistry related files.
## Chemical Properties & Resources
### General
## General Resources
+ [PeriodicTable.jl](https://github.com/JuliaPhysics/PeriodicTable.jl) :: Well its the periodic table - in Julia!
+ [PhysicalConstants.jl](https://github.com/JuliaPhysics/PhysicalConstants.jl) :: A package containing curated physical constants.
+ [Videos for JuliaQuantum](https://www.youtube.com/channel/UCXeOiWjj3rcYUQqfgelTDWQ) technical talks and meetups.
+ [Computing colors of molecules with Julia](https://github.com/jiahao/ijulia-notebooks), the [Colors of chemistry notebook](http://jiahao.github.io/julia-blog/2014/06/09/the-colors-of-chemistry.html) and [Chemistry blog](http://jiahao.github.io/julia-blog/)
### Thermochemistry
+ [CoolProp.jl](https://github.com/CoolProp/CoolProp.jl) :: CoolProp wrapper for Julia
+ [Lavoisier.jl](https://github.com/longemen3000/lavoisier) :: Thermodynamics models of gasseus compounds.
+ [Psychro.jl](https://github.com/pjabardo/Psychro.jl) :: Thermodynamics properties of wet air and gasses.
## Chemical File Formats and Input Output
+ [Chemfiles.jl](https://github.com/chemfiles/Chemfiles.jl) :: A Julia binding for the [Chemfiles](https://github.com/chemfiles/chemfiles) library for reading and writing chemistry related files.
----
## Biochemistry
+ [MethylUtils.jl](https://github.com/nw11/MethylUtils.jl) :: Utilities for bisulfite sequencing data.
+ [DynamicTimeWarp.jl](https://github.com/joefowler/DynamicTimeWarp.jl) :: Implement Dynamic Time Warping for sequence alignment in Julia.
+ [BioSymbols.jl](https://github.com/BioJulia/BioSymbols.jl) :: Nucleic and amino acid primitive types
----
## Chemometrics
+ [ChemometricsTools.jl](https://github.com/caseykneale/ChemometricsTools.jl) :: A collection of tools to perform fundamental and advanced Chemometric analysis and machine learning in Julia.
+ [Qlab.jl](https://github.com/blakejohnson/Qlab.jl) :: is a data manipulation and analysis tool based on the Savitzky–Golay filter - a digital filter that can be applied to a set of digital data points for the purpose of smoothing the data to increase the signal-to-noise ratio without greatly distorting the signal. Savitzky and Golay's paper is one of the most widely cited papers in the Analytical Chemistry journal.
----
## Chemoinformatics
+ [Synchrony.jl](https://github.com/simonster/Synchrony.jl) :: Coherence/phase-locking statistics in Julia.
+ [OpenSMILES.jl](https://github.com/caseykneale/OpenSMILES.jl) :: OpenSMILES string representations to LightGraphs.jl format.
----
## Computational Tools
+ [Lattices.jl](https://github.com/JuliaPhysics/Lattices.jl) :: A Lattice Library for Julia.
+ [Cliffords.jl](https://github.com/BBN-Q/Cliffords.jl) :: This library allows for efficient calculation of Clifford circuits by tracking the evolution of X and Z generators (the so-called tableau representation). Ref: http://en.wikipedia.org/wiki/Clifford_algebra
----
## [Molecular Modelling](https://en.wikipedia.org/wiki/Category:Molecular_modelling)
+ [JuLIP.jl](https://github.com/JuliaMolSim/JuLIP.jl) :: Julia Library for Interatomic Potentials.
+ [ASE.jl](https://github.com/JuliaMolSim/ASE.jl) :: Julia Bindings for the [Atomic Simulation Environment (ASE)](https://wiki.fysik.dtu.dk/ase)
+ [Molly.jl](https://github.com/jgreener64/Molly.jl) :: Molecular dynamics in Julia.
----
## Material Science
+ [BucklingOfPipes.jl](https://github.com/goedman/BucklingOfPipes.jl) :: This package investigates the buckling behavior of composite pipes, e.g. in long horizontal reach holes.
+ [ClassicalLaminateTheory.jl](https://github.com/goedman/ClassicalLaminateTheory.jl) :: Laminate model functions used in EDX course __AA432x Composite Materials Overview for Engineers__ by K.Y.Lin.
+ [Dimers.jl](https://github.com/sswatson/Dimers.jl) :: Oligomers with two structurally similar monomers. See, http://en.wikipedia.org/wiki/Category:Dimers_%28chemistry%29
## Chemometrics
+ [ChemometricsTools.jl](https://github.com/caseykneale/ChemometricsTools.jl) :: A collection of tools to perform fundamental and advanced Chemometric analysis and machine learning in Julia.
+ [Qlab.jl](https://github.com/blakejohnson/Qlab.jl) :: is a data manipulation and analysis tool based on the Savitzky–Golay filter - a digital filter that can be applied to a set of digital data points for the purpose of smoothing the data to increase the signal-to-noise ratio without greatly distorting the signal. Savitzky and Golay's paper is one of the most widely cited papers in the Analytical Chemistry journal.
----
## [Physical Chemistry](https://en.wikipedia.org/wiki/Category:Physical_chemistry)
## Reaction Kinetics
### Reaction Kinetics
+ [ChemicalKinetics.jl](https://github.com/papamarkou/ChemicalKinetics.jl) :: DiffEq related functionality for defining biological models.
+ [DiffEqBiological.jl](https://github.com/SciML/DiffEqBiological.jl) - [Docs](https://docs.sciml.ai/v5.0/models/biological.html) :: Domain Specific Language for doing chemical kinetics provided by DiffEqBiological.jl.
----
### Thermochemistry
+ [CoolProp.jl](https://github.com/CoolProp/CoolProp.jl) :: CoolProp wrapper for Julia
+ [Lavoisier.jl](https://github.com/longemen3000/lavoisier) :: Thermodynamics models of gasseus compounds.
+ [Psychro.jl](https://github.com/pjabardo/Psychro.jl) :: Thermodynamics properties of wet air and gasses.
## [Physical Chemistry](https://en.wikipedia.org/wiki/Category:Physical_chemistry)
### [Colloidal Chemistry](#https://en.wikipedia.org/wiki/Category:Colloidal_chemistry)
+ [Brownian.jl](https://github.com/UniversityofWarwick/Brownian.jl) :: Simulation of Brownian-Based Stochastic Processes .
## Simulation Methods
Overview of Julia packages for simulation methods related to chemistry and
[Molecular Modelling](https://en.wikipedia.org/wiki/Category:Molecular_modelling),
such as [Molecular dynamics](https://en.wikipedia.org/wiki/Molecular_dynamics),
[Quantum dynamics](https://en.wikipedia.org/wiki/Quantum_dynamics) or electronic-structure theory.
+ [JuliaMolSim](https://github.com/JuliaMolSim) :: Github organization for molecular simulation in Julia
- [ASE.jl](https://github.com/JuliaMolSim/ASE.jl) :: Julia Bindings for the [Atomic Simulation Environment (ASE)](https://wiki.fysik.dtu.dk/ase)
- [DFTK.jl](https://github.com/JuliaMolSim/DFTK.jl) :: Flexible Julia code for plane-wave [density-functional theory (DFT)](https://en.wikipedia.org/wiki/Density_functional_theory) and related models.
- [JuLIP.jl](https://github.com/JuliaMolSim/JuLIP.jl) :: Julia library for Interatomic Potentials.
- [MolSimPy.jl](https://github.com/JuliaMolSim/MolSimPy.jl) :: Python bindings for molecular simulations.
- [NeighborLists.jl](https://github.com/JuliaMolSim/NeighborLists.jl) :: Neighbour list for particle simulations based on matscipy.
- [SHIPs.jl](https://github.com/JuliaMolSim/SHIPs.jl) :: Approximation of Symmetric Functions with Polynomials and Spherical Harmonics.
+ [Brownian.jl](https://github.com/UniversityofWarwick/Brownian.jl) :: Simulation of Brownian-Based Stochastic Processes.
+ [Elsa.jl](https://github.com/pablosanjose/Elsa.jl) :: Simulation of tight-binding models on arbitrary lattices
+ [Molly.jl](https://github.com/jgreener64/Molly.jl) :: Molecular dynamics in Julia.
+ [pyquante2](https://github.com/rpmuller/pyquante2/) :: PyQuante is a Quantum Chemistry suite written in Python, with Julia support for HF and methods for integrals.
+ [QSimulator.jl](https://github.com/BBN-Q/QSimulator.jl) :: Unitary and Lindbladian evolution of quantum states in Julia.
+ [QuantumLab.jl](https://github.com/vonDonnerstein/QuantumLab.jl) :: A workbench for Quantum Chemistry and Quantum Physics in Julia
### [Solid State Chemistry](https://en.wikipedia.org/wiki/Solid-state_chemistry)
+ [ChemicalKinetics.jl](https://github.com/scidom/ChemicalKinetics.jl) :: Simulation, Bayesian inference and Bayesian model selection for chemical kinetics in Julia.
+ [HydrocarbonNets.jl](https://github.com/Ismael-VC/HydrocarbonNets.jl) :: Artificial Hydrocarbon Networks (AHNs) in Julia.
----
## [Solid State Chemistry](https://en.wikipedia.org/wiki/Solid-state_chemistry) and Materials Science
+ [ClassicalLaminateTheory.jl](https://github.com/goedman/ClassicalLaminateTheory.jl) :: Laminate model functions used in EDX course __AA432x Composite Materials Overview for Engineers__ by K.Y.Lin.
+ [HydrocarbonNets.jl](https://github.com/Ismael-VC/HydrocarbonNets.jl) :: Artificial Hydrocarbon Networks (AHNs) in Julia.
+ [Lattices.jl](https://github.com/JuliaPhysics/Lattices.jl) :: A Lattice Library for Julia.
## Quantum Chemistry
### JuliaMolSim
+ [Molecular Simulation for Julia](https://github.com/JuliaMolSim) :: Organization for molecular simulations.
+ [DFTK.jl](https://github.com/JuliaMolSim/DFTK.jl) :: Plane-wave density-functional theory code in Julia.
+ [ASE.jl](https://github.com/JuliaMolSim/ASE.jl) :: Julia Bindings for Atomic Simulation Environment.
+ [SHIPs.jl](https://github.com/JuliaMolSim/SHIPs.jl) :: Approximation of Symmetric Functions with Polynomials and Spherical Harmonics.
+ [JuLIP.jl](https://github.com/JuliaMolSim/JuLIP.jl) :: Julia Library for Interatomic Potentials
+ [MolSimPy.jl](https://github.com/JuliaMolSim/MolSimPy.jl) :: Python bindings for molecular simulations.
+ [NeighborLists.jl](https://github.com/JuliaMolSim/NeighborLists.jl) :: neighbour list for particle simulations based on matscipy.
### General Registry
+ [pyquante2](https://github.com/rpmuller/pyquante2/) :: PyQuante is a Quantum Chemistry suite written in Python, with Julia support for HF and methods for integrals.
+ [QSimulator.jl](https://github.com/BBN-Q/QSimulator.jl) :: Unitary and Lindbladian evolution of quantum states in Julia.
----
## Resources
+ [Videos for JuliaQuantum](https://www.youtube.com/channel/UCXeOiWjj3rcYUQqfgelTDWQ) technical talks and meetups.
+ [Computing colors of molecules with Julia](https://github.com/jiahao/ijulia-notebooks), the [Colors of chemistry notebook](http://jiahao.github.io/julia-blog/2014/06/09/the-colors-of-chemistry.html) and [Chemistry blog](http://jiahao.github.io/julia-blog/)
## Uncategorized
+ [Cliffords.jl](https://github.com/BBN-Q/Cliffords.jl) :: This library allows for efficient calculation of Clifford circuits by tracking the evolution of X and Z generators (the so-called tableau representation). Ref: http://en.wikipedia.org/wiki/Clifford_algebra
+ [Dimers.jl](https://github.com/sswatson/Dimers.jl) :: Oligomers with two structurally similar monomers. See, http://en.wikipedia.org/wiki/Category:Dimers_%28chemistry%29
......@@ -184,7 +184,7 @@ __Package/Infrastructure management tools and Documentation__
##### DOCS
+ Official [Julia Package list](http://docs.julialang.org/en/latest/packages/packagelist/).
+ The [Julia package manager manual](http://docs.julialang.org/en/latest/manual/packages/)
- [Package Development Documentation](http://docs.julialang.org/en/latest/manual/packages/#package-development)
* [Package Development Documentation](http://docs.julialang.org/en/latest/manual/packages/#package-development)
[//]: # (######################################################################)
......@@ -220,14 +220,14 @@ __Package/Infrastructure management tools and Documentation__
## UNITTEST
+ [BaseTestDeprecated.jl](https://github.com/IainNZ/BaseTestDeprecated.jl) :: Provides the `Base.Test` functionality removed in `Julia v0.5`.
+ [CoverageBase.jl](https://github.com/timholy/CoverageBase.jl) :: Measuring internal test coverage of the Julia programming language.
+ [Coverage.jl](https://github.com/IainNZ/Coverage.jl) :: Take the Julia test coverage results and bundle them up in JSON - it processes a .jl file and its matching .cov file, tracking your Julia packages for test coverage and works with Coveralls, which integrates with TravisCI.
+ [Coverage.jl](https://github.com/IainNZ/Coverage.jl) :: Take the Julia test coverage results and bundle them up in JSON - it processes a .jl file and its matching `.cov` file, tracking your Julia packages for test coverage and works with Coveralls, which integrates with TravisCI.
+ [Debug.jl](https://github.com/toivoh/Debug.jl) :: Prototype interactive debugger for Julia.
+ [FactCheck.jl](https://github.com/zachallaun/FactCheck.jl) :: Midje-like testing framework written for Julia.
+ [Fixtures.jl](https://github.com/burrowsa/Fixtures.jl) :: provides fixtures, mocks, matchers and patching to improve your tests with Julia.
+ [Jig.jl](https://github.com/milktrader/Jig.jl) :: Testing framework for Julia.
+ [JLTest](https://github.com/smangano/JLTest) :: A unittest framework for Julia (inspired by Python's unittest).
+ [JulieTest.jl](https://github.com/arypurnomoz/JulieTest.jl) :: A Julia testing framework inspired by javascript's Mocha. See the [Wiki](https://github.com/arypurnomoz/JulieTest.jl/wiki)
+ [microcoverage](https://github.com/StephenVavasis/microcoverage) :: This module computes code coverage for a Julia program at a more fine-grained level than the built-in coverage feature. Specifically, it provides coverage counts for each branch of the ||, && and ?: operators where they occur. It also counts the number of invocations to statement-functions.
+ [microcoverage](https://github.com/StephenVavasis/microcoverage) :: This module computes code coverage for a Julia program at a more fine-grained level than the built-in coverage feature. Specifically, it provides coverage counts for each branch of the `||, && and ?:` operators where they occur. It also counts the number of invocations to statement-functions.
+ [Mocking.jl](https://github.com/invenia/Mocking.jl) : Allows temporary overwriting of Julia methods for testing purposes.
+ [PackageTesting.jl](https://github.com/johnmyleswhite/PackageTesting.jl) :: A standard for testing Julia packages.
+ [RunTests.jl](https://github.com/burrowsa/RunTests.jl) :: A test running framework for Julia that extends Base.Test
......
......@@ -258,6 +258,7 @@ NB: Many packages may not be regularly updated to work with Julia nightlies or t
+ [PolarFact.jl](https://github.com/weijianzhang/PolarFa.jl) :: A Julia package for the matrix polar decomposition.
+ [SALT.jl](https://github.com/xdavidliu/SALT.jl) :: SALT (steady-state ab-initio laser theory) solver package for Julia.
+ [SuperLU.jl](https://github.com/dmbates/SuperLU.jl) :: Julia interface to the SuperLU solver package for sparse systems.
+ [Transducers.jl](https://github.com/tkf/Transducers.jl) :: provides composable algorithms on "sequence" of inputs. This feature, available in Clojure language, is a [transformation matrix](https://en.wikipedia.org/wiki/Transformation_matrix) for linear transformations that is now in Julia.
### [Matrix Theory](https://en.wikipedia.org/wiki/Category:Matrix_theory)
__Special Array Types and Algorithms__
......
+ [Astrophysics](#astrophysics)
+ [Electromagnetism](#electromagnetism)
+ [Fluid Dynamics](#fluid-dynamics)
+ [Laser Physics](#laser-physics)
......@@ -22,11 +23,8 @@
+ [JuliaPower](https://github.com/prezaei85/JuliaPower) :: A package of scripts in Julia to solve power flow and simulate cascading failures in power systems.
+ [LambertW.jl](https://github.com/robertdj/LambertW.jl) :: Lambert's W function in Julia.
+ [Mass.jl](https://github.com/ggggggggg/Mass.jl) :: An experimental frameworks for TES pulse analysis.
+ [Measurements.jl](https://github.com/giordano/Measurements.jl) :: Error
propagation calculator and library. It supports real and complex numbers with
uncertainty, arbitrary precision calculations, and operations with arrays.
+ [MonteCarloMeasurements.jl](https://github.com/baggepinnen/MonteCarloMeasurements.jl) :: Error
propagation using Monte-Carlo simulation. Similar to Measurements.jl, but more accurate for highly nonlinear functions at the expense of longer execution time.
+ [Measurements.jl](https://github.com/giordano/Measurements.jl) :: Error propagation calculator and library. It supports real and complex numbers with uncertainty, arbitrary precision calculations, and operations with arrays.
+ [MonteCarloMeasurements.jl](https://github.com/baggepinnen/MonteCarloMeasurements.jl) :: Error propagation using Monte-Carlo simulation. Similar to Measurements.jl, but more accurate for highly nonlinear functions at the expense of longer execution time.
+ [Physical.jl](https://github.com/ggggggggg/Physical.jl)
+ [Quantities.jl](https://github.com/ElOceanografo/Quantities.jl) :: Dimensions and Quantities.
+ [ROOT.jl](https://github.com/jpata/ROOT.jl) :: A toy experiment interfacing ROOT and Julia through FWLite. [ROOT](http://root.cern.ch) is a data analysis library widely used at experiments at CERN for HEP data analyses.
......@@ -35,6 +33,13 @@
----
# [Astrophysics](https://en.wikipedia.org/wiki/Category:Astrophysics)
## Plasma Physics
* [VlaPy](https://github.com/joglekara/VlaPy) :: 1D-1V Vlasov-Poisson(-Fokker-Planck) Plasma Physics Simulation Tool.
----
# Electromagnetism
+ [Dipole julia](https://github.com/manuamador/Dipole_julia) :: A set of functions that computes the electromagnetic radiation of an Hertz dipole (E and B fields).
+ [Reverb Julia](https://github.com/manuamador/Reverb_Julia) :: A julia version of an electromagnetic reverberation chamber model based on image theory.
......@@ -67,8 +72,9 @@
+ [QuDOS.jl](https://github.com/acroy/QuDOS.jl) :: Quantum Dynamics of Open Systems in Julia.
+ [WignerSymbols.jl](https://github.com/Jutho/WignerSymbols.jl) :: A Julia package for computing Wigner symbols and related quantities.
### [Julia Quantum](http://juliaquantum.github.io/)
An umbrella Org for Quantum Physics, Lindblad dynamics, Quantum tensor network, information and computation, etc...
## Quantum Physics
Quantum Physics, Lindblad dynamics, Quantum tensor network, information and computation, etc...
+ [MERA.jl](https://github.com/mhauru/MERA.jl) :: provides Julia implementations of some basic Multiscale Entaglement Renormalization Ansatz algorithms.
+ [QuBase.jl](https://github.com/JuliaQuantum/QuBase.jl) :: A foundational library for quantum mechanics in Julia, that provides a unifying type structure and set of basic functions for computational quantum mechanics.
+ [QuDirac.jl](https://github.com/JuliaQuantum/QuDirac.jl) :: A library for performing quantum mechanics using Dirac notation.
+ [QuDynamics.jl](https://github.com/JuliaQuantum/QuDynamics.jl) :: A library for solving dynamical equations in quantum mechanics.
......
......@@ -7,7 +7,7 @@ __Networking, web security, frameworks and other Web server related things go he
+ [NETWORKING](#networking)
+ [SECURITY](#security)
+ [WEB](#web)
+ [CSS](#css)
+ [HTML-CSS](#html-css)
+ [Email](#email)
+ [Videos](#videos)
+ [WIDE](#wide)
......@@ -102,8 +102,9 @@ __Networking, web security, frameworks and other Web server related things go he
+ The [Julia Webstack](http://juliawebstack.org) documentation for [TCP Sockets for webstack.jl](http://blog.leahhanson.us/using-tcp-sockets-in-julia.html)
## CSS
## HTML-CSS
+ [Cascadia.jl](https://github.com/Algocircle/Cascadia.jl) :: A CSS Selector library in Julia.
+ [DisplayAs.jl](https://github.com/tkf/DisplayAs.jl) :: It provides functions to show objects in a chosen MIME type.
## Email
+ [Mandrill.jl](https://github.com/aviks/Mandrill.jl) :: Mandrill API in Julia.
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# Utilities.md
[Utility software](https://en.wikipedia.org/wiki/Utility_software) for storage, disk and OS utils to help analyze, configure, optimize or maintain a computer, viz. middleware, utility software, Shells and other handy utilities
+ [UTILS](#utils)
+ [File Compression](#file-compression)
+ [Microsoft Windows](#microsoft-windows)
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