ValueError: at least one array or dtype is required
I'm trying to run mge-cluster on 27 plasmids, each in their own .fna. I am just getting started, so I am using the basic code you have on the program page, namely: mge_cluster --create --input mge_input.txt --outdir results --prefix new-model --perplexity 30 --min_cluster 10 --threads 32
I am getting this log: Operational mode of mge-cluster: --create Loading unitigs... Unitigs loaded Traceback (most recent call last): File "/home/aru/anaconda3/envs/mge-cluster/bin/mge_cluster", line 10, in sys.exit(main()) File "/home/aru/anaconda3/envs/mge-cluster/lib/python3.10/site-packages/mge_cluster/main.py", line 128, in main tsne_train(options.prefix,options.outdir, options.min_cluster, options.threads, options.perplexity, options.exaggeration, options.variance) File "/home/aru/anaconda3/envs/mge-cluster/lib/python3.10/site-packages/mge_cluster/opentsne.py", line 28, in tsne_train _ = vt.fit(transpose_df) File "/home/aru/anaconda3/envs/mge-cluster/lib/python3.10/site-packages/sklearn/feature_selection/_variance_threshold.py", line 91, in fit X = self._validate_data( File "/home/aru/anaconda3/envs/mge-cluster/lib/python3.10/site-packages/sklearn/base.py", line 566, in _validate_data X = check_array(X, **check_params) File "/home/aru/anaconda3/envs/mge-cluster/lib/python3.10/site-packages/sklearn/utils/validation.py", line 665, in check_array dtype_orig = np.result_type(*dtypes_orig) ValueError: at least one array or dtype is required