Issues · Sergio_Arredondo / gplas

New issue

Installation problem need to specify max CPU cores

#22 · opened Feb 23, 2021 by feanor1914
- CLOSED
- 1
updated Feb 23, 2021
Error with a particular short read assembly.gfa file

#21 · opened Sep 30, 2020 by Ken Ringwald
- 1
updated Oct 14, 2020
installation problem

#20 · opened Aug 10, 2020 by moshtaqtsr conda installation macOS snakemake_path
- 28
updated Feb 25, 2021
Fails to import sequence

#19 · opened Apr 24, 2020 by juliofdiaz installation memory
- CLOSED
- 12
updated Sep 09, 2020
Issue Installing gplas

#18 · opened Feb 24, 2020 by Ghost User installation no_plasmids
- CLOSED
- 6
updated Mar 04, 2020
suitability for metagenomic assembly

#17 · opened Jan 13, 2020 by Casper Jamin improvement metagenomics
- CLOSED
- 1
updated Apr 03, 2020
Other species

#16 · opened Dec 20, 2019 by Hector_CarSal improvement
- CLOSED
- 1
- 3
updated Dec 20, 2019
gplas installation problems

#15 · opened Dec 05, 2019 by Fernando Gonzalez-Candelas installation
- CLOSED
- 5
updated Dec 09, 2019
Gfa plasmidome network

#14 · opened Dec 05, 2019 by Sergio_Arredondo improvement output
- 0
updated Jan 14, 2020
Conda asks to remove existing environment

#13 · opened Nov 12, 2019 by Casper Jamin installation
- CLOSED
- 1
- 6
updated Nov 13, 2019
Create a flag to specify an output directory

#12 · opened Nov 12, 2019 by Sergio_Arredondo improvement output
- 0
updated Jan 14, 2020
Check species passed when using mlplasmids as classifier

#11 · opened Nov 12, 2019 by Sergio_Arredondo improvement
- CLOSED
- 1
updated Jan 10, 2020
Error in rule mlplasmids

#10 · opened Nov 12, 2019 by Casper Jamin improvement usage
- CLOSED
- 5
updated Nov 12, 2019
unable to run pipeline due to snakemake unable to find .smk file

#9 · opened Nov 12, 2019 by Casper Jamin improvement usage
- CLOSED
- 1
- 3
updated Nov 12, 2019
error during first time installation, snakemake KeyError line 118

#8 · opened Nov 12, 2019 by Casper Jamin installation
- CLOSED
- 3
updated Nov 12, 2019
Fails when running gplas_evaluation

#7 · opened Sep 18, 2019 by Bryan Wee evaluation_rule
- CLOSED
- 1
- 2
updated Sep 20, 2019
Error in rule gplas_coocurr

#6 · opened Sep 17, 2019 by Malbert Rogers gfaversion usage
- CLOSED
- 4
updated Sep 20, 2019
Fails at the gplas_coocurr step

#5 · opened Sep 12, 2019 by Bryan Wee gfaversion usage
- CLOSED
- 4
updated Sep 20, 2019
License

#4 · opened Jul 23, 2019 by Anita Schurch usage
- CLOSED
- 1
updated Sep 02, 2019
gplas installation problems - plasflow

#3 · opened Jul 10, 2019 by Anita Schurch installation
- CLOSED
- 4
updated Aug 28, 2019