- Everything seems in order. In fact some of the
  convergence properties are now better due to the
  constraint on the Hamiltonian.

- Fixed the print-out of error on the energy density
  matrix to print in eV.

- Fixed scripts for TS tests to only compile tbtrans
  if it isn't already compiled.

- Removed mentions of old flags in the TS test.
  Also corrected those which have farther than principal
  cell connections.
  In these situations I have added a remark for the flag
  so it should be clear its use is highly discouraged.