Commit d7734986 authored by Sebastian Schmeier's avatar Sebastian Schmeier

Added info on Singularity

parent f4d37c32
......@@ -75,3 +75,10 @@ snakemake -Tp --use-singularity --snakefile examples/Snakefie_v8
# use singularity locally but get smaples from GS bucket and put results to bucket as well
snakemake -Tp --use-singularity --default-remote-provider GS --default-remote-prefix schmeier-reproduce-bucket --snakefile examples/Snakefile_v9
```
### NeSI
```bash
# using Singularity, only if set up on cluster
snakemake --use-singularity --singularity-args "--bind /scale_wlg_nobackup/filesets/nobackup/PROJECTNUMBER" -j 999 --cluster-config data/nesi/cluster-nesi-mahuika.yaml --cluster "sbatch -A {cluster.account} -p {cluster.partition} -n {cluster.ntasks} -t {cluster.time} --hint={cluster.hint} --output={cluster.output} --error={cluster.error} -c {cluster.cpus-per-task} --mem={cluster.mem}" -p --rerun-incomplete
```
\ No newline at end of file
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment