Sarah Busby closed issue #35: De novo assembled genomes don't have coverage.pickle at LPCDRP / drug-resistance

Sarah Busby
2019-06-21T15:22:13Z

Traceback (most recent call last): File "src/known-resistance-association.py", line 243, in <module> main() File "src/known-resistance-association.py", line 222, in main excluded_isolates = Exclude.exclude_isolates(data_dir, drug) File "/home/sbusby/workspace/drug-papers/drug-resistance/src/Exclude.py", line 9, in exclude_isolates with open(output_directory + '_coverage.pickle', 'r') as pickle_file: IOError: [Errno 2] No such file or directory: 'data/association/amk-swedes/_coverage.pickle'