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- Maintenance: Upgrade cython code to use `dataclasses` [issue](https://gitlab.com/salvo981/sonicparanoid2/-/issues/68).
- Fix: [inclusion of hits with lower bitscores due to overwrite](https://gitlab.com/salvo981/sonicparanoid2/-/issues/63)
- Fix: in species-species ortholog [tables single relations were counted as 2](https://gitlab.com/salvo981/sonicparanoid2/-/issues/69)
- Fix: [slowdowns due to queue timeout](https://gitlab.com/salvo981/sonicparanoid2/-/issues/65) (only happened with thousands of proteomes and using slow storage)
- Python version: 3.9<=python<=3.11 (this means that Python 3.8 is not supported anymore)
- Maintenance: update to support latest Cython release
- Maintenance: include ealy version of pyproject.toml (still use setup.py to compile Cython source files)