Merge branch 'master' into '62-mode-thresholding-by-permutation'

default:

  image: debian:buster

include:

  - template: 'Workflows/MergeRequest-Pipelines.gitlab-ci.yml'

before_script:

  - apt update

  - apt upgrade -q -y

  - pip install -r requirements.txt

stages:

  - build_test

  - build

build_test:

  stage: build_test

build37:

  stage: build

  image: python:3.7

  script:

    - flake8

    - make clean

    - make all

    - pytest

  artifacts:

    paths:

      - dist/

    expire_in: 1 week

build38:

  stage: build

  image: python:3.8

  script:

    - flake8

    - make clean

    - make all

    - pytest

  artifacts:

    paths:

      - dist/

    expire_in: 1 week

build39:

  stage: build

  image: python:3.9

  script:

    - flake8

    - make clean

    - make all

    - pytest

  artifacts:

    paths:

      - dist/

    expire_in: 1 week

build310:

  stage: build

  image: python:3.10

  script:

    - apt update

    - apt upgrade -y

    - apt install -y python3-setuptools python3-numpy python3-scipy python3-matplotlib python3-h5py python3-sklearn python3-sphinx python3-sphinx-rtd-theme ipython3 flake8 python3-setuptools python3-pytest python3-pytest-cov python3-wheel codespell

    - flake8

    - make spell

    - python3 setup.py build

    - make doc-html

    - make testv3

    - python3 setup.py sdist bdist_wheel

    - make clean

    - make all

    - pytest

  artifacts:

    paths:

      - dist/

Repository

==========

The main git repository can be found at https://vcs.ynic.york.ac.uk/analysis/sails

The main git repository can be found at https://gitlab.com/sails-dev/analysis/sails

Contributing

============

If you wish to raise issues on, or contribute patches to SAILS, you will need

an account on the Gitlab server.  This can be obtained by going to

https://vcs.ynic.york.ac.uk, going to the "Sign In" link and then using

the self-service interface to create an account.  By default you will be able

to file issues on the codebase.  If you wish to be able to create MRs please

tag @aq501 or @mark in the relevant issue and we will give you permission to

do so.  Alternatively, please feel free to email one of us.

an account on gitlab.com.  If you wish to be able to create MRs please tag

@ajquinn or @mhy in the relevant issue and we will give you permission to do

so.  Alternatively, please feel free to email one of us.

Authors

=======

   virtualenv and install it that way.  If you need to test it, test against `https://test.pypi.org`

   rather than the real `https://pypi.org` (see the Packaging Python Documents tutorial at

   https://packaging.python.org/tutorials/packaging-projects/)

 * Ensure that you have a gitlab API token set up for `vcs.ynic.york.ac.uk`

 * Ensure that you have a gitlab API token set up for `gitlab.com`

Release

   You will need to update the variables in the curl snippet below:

```

curl --header 'Content-Type: application/json' \

     --header "PRIVATE-TOKEN: GITLAB_ACCESS_TOKEN_HERE" \

     --data '{ "name": "x.y.z", "tag_name": "x.y.z", "description": "Release description here", "assets": { "links": [{ "name": "sails-x.y.z.tar.gz", "url": "https://files.pythonhosted.org/.../sails-x.y.z.tar.gz" }, { "name": "sails-x.y.z-py2-non-any.whl", "url": "https://files.pythonhosted.org/.../sails-x.y.z-py2-none-any.whl"}, { "name": "sails-x.y.z-py3-none-any.whl", "url": "https://files.pythonhosted.org/.../sails-x.y.z-py3-none-any.whl"}] } }' \

     --request POST "https://vcs.ynic.york.ac.uk/api/v4/projects/258/releases"

     --header "PRIVATE-TOKEN: ${GITLAB_ACCESS_TOKEN}" \

     --data '{ "name": "1.1.0", "tag_name": "1.1.0", "description": "v1.1.0 release", "assets": { "links": [{ "name": "sails-1.1.0.tar.gz", "url": "https://files.pythonhosted.org/packages/f9/ad/80d899318aa98f662c92287206ed62e860048a364084c76307c4f02c7047/sails-1.1.0.tar.gz" }, { "name": "sails-1.1.0-py3-none-any.whl", "url": ""https://files.pythonhosted.org/packages/05/35/12f7e8c21a6bf19e1edb806debb2385a2dc1b2613728d7badf6c0928d7c9/sails-1.1.0-py3-none-any.whl}] } }' \

     --request POST "https://gitlab.com/api/v4/projects/23671946/releases"

```

Tutorials and documentation regarding the use of the module are available at

https://sails.readthedocs.org.  Development and bug tracking is

hosted at https://vcs.ynic.york.ac.uk/analysis/sails.

hosted at https://github.com/sails-dev/sails.

The majority of workflows can be summarised as:

:root {

  /*****************************************************************************

  * Theme config

  **/

  --pst-header-height: 90px;

}