Simplifications and some corrections on ET

OpenSimRoot/tests/modules/testResults/

OpenSimRoot/tests/modules/gravitropismTest/

OpenSimRoot/tests/engine/testResults/

OpenSimRoot/tests/defaultInputFiles/Output

*.o

*.d

*.aux

<?xml version="1.0" encoding="UTF-8"?>

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<?xml-stylesheet type="text/xsl" href="XML/treeview.xsl"?>

<?xml version="1.0" encoding="UTF-8"?>

<SimulationModelIncludeFile xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"  xsi:noNamespaceSchemaLocation="https://rootmodels.gitlab.io/opensimroot/XML/SimulaXMLSchema.xsd">

	<SimulaBase name="barleyBarke">

		<SimulaBase name="shoot">

			<!-- average density in michaelis data (dryweight/volume) is 0.037 min 0.0114379085 max 0.0826010545 mean 0.0370240644 stdev 0.0141592529 median 0.0327526685 ; Vera Hecht PT1: Sca Low: mean=0.05339 g/cm³, max=0.082, Sca High: mean=0.0284 g/cm³, max=0.032.

			There seems to be no time or genotype or treatment effect on this. -->

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.05 

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

 			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3">

			<!-- 2013 field v.hecht 10-15 cm3/g, 2014 7-12 cm3/g = 0.0666 0.0833  0.1 0.14 g/cm3  -->

				0.08 <!-- 0.08 upper limit michaelis data ; Vera Hecht PT1: Sca Low: mean=0.05339 g/cm³, max=0.082, Sca High: mean=0.0284 g/cm³, max=0.032-->

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3">

				<!-- average density in michaelis data (dryweight/volume) is 0.037 min 0.0114379085 max 0.0826010545 mean 0.0370240644 stdev 0.0141592529 median 0.0327526685 ; Vera Hecht PT1: Sca Low: mean=0.05339 g/cm³, max=0.082, Sca High: mean=0.0284 g/cm³, max=0.032.

					There seems to be no time or genotype or treatment effect on this. -->

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.037 

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.037 

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.037 

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.037 

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.037 

			</SimulaConstant>

		</SimulaBase>

			<SimulaBase name="branchList">

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.037 

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase-->

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

			<SimulaBase name="branchList">

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				<!--there are no branches on lateral roots-->

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				<!--there are no branches on lateral roots-->

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.094

			</SimulaConstant>

		</SimulaBase>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.0001</SimulaConstant><!--  very low as this is the original cutting, but for simplicity we 'grow' it first -->

		</SimulaBase>

		<SimulaBase name="primaryRoot" 	objectGenerator="copyDefaults">

				name="copyDefaultsFrom">../defaultsMajorAxis</SimulaConstant>

			<SimulaBase name="branchList"></SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.00001</SimulaConstant>

		</SimulaBase>

		<SimulaBase name="basalRoot"

				name="lengthRootTip"

				unit="cm"> 4.0</SimulaConstant>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3">

				0.1 <!-- primary maize root 0.94 dry weight / fresh weight 1. Ali M. Pahlavanian and Wendy Kuhn Silk, “Effect of Temperature on Spatial and Temporal Aspects of Growth in the Primary Maize Root ,” Plant Physiol. 87, no. 2 (June 1, 1988): 529-532.-->

			</SimulaConstant>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3">

				0.1 <!-- primary maize root 0.94 dry weight / fresh weight 1. Ali M. Pahlavanian and Wendy Kuhn Silk, “Effect of Temperature on Spatial and Temporal Aspects of Growth in the Primary Maize Root ,” Plant Physiol. 87, no. 2 (June 1, 1988): 529-532.-->

			</SimulaConstant>

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.1</SimulaConstant>

		</SimulaBase>

		<SimulaBase name="lateralPrimaryRoot" objectGenerator="copyDefaults">

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.1</SimulaConstant>

		</SimulaBase>

		<!--PARAMETERS FOR tetiarySquash ROOTS-->

				</SimulaBase>

			</SimulaBase>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.1</SimulaConstant>

		</SimulaBase>

		<SimulaBase name="finelateral" objectGenerator="copyDefaults">

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.1</SimulaConstant>

			<SimulaBase name="branchList"></SimulaBase>

		</SimulaBase>

				type="string"

				name="copyDefaultsFrom">../defaultsMajorAxis</SimulaConstant>

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.1</SimulaConstant>

			<!--SimulaConstant

				name="branchingAngle"

		</SimulaBase>

		<SimulaBase name="lateralHypocotylBornRoots" objectGenerator="copyDefaults">

			<SimulaConstant

				name="density"

				name="specificWeight"

				unit="g/cm3"> 0.1</SimulaConstant>

			<SimulaBase name="branchList"></SimulaBase>

		</SimulaBase>