Commit 3b098ce9 authored by Radford Neal's avatar Radford Neal

Files from R-2.15.0.

parent 8b1efab8

Too many changes to show.

To preserve performance only 1000 of 1000+ files are displayed.

......@@ -32,7 +32,6 @@ Then check the built system worked correctly, by
and make the manuals by (as many options as preferred from)
make dvi to create DVI versions
make pdf to create PDF versions
make info to create info files
......@@ -48,7 +47,6 @@ You do not need to install R to run it: you can run R by the script
For a site-wide installation, use
make install
make install-dvi
make install-info
make install-pdf
......
......@@ -17,21 +17,21 @@ BUILDDIR_IS_SRCDIR = @BUILDDIR_IS_SRCDIR@
BUILD_CC = @BUILD_CC@
BUILD_R = @BUILD_R@
CC = @CC@
CFLAGS = @CFLAGS@
CFLAGS = @CFLAGS@ @LTO@
CPICFLAGS = @CPICFLAGS@
CPPFLAGS = @CPPFLAGS@
DEFS = @DEFS@ @R_DEFS@
DISTDIR_TAR_EXCLUDE = --exclude=.svn --exclude=Makefile --exclude="*.o" --exclude="*$(SHLIB_EXT)" --exclude="*~"
DVIPS = @DVIPS@
DYLIB_EXT = @DYLIB_EXT@
DYLIB_LD = @DYLIB_LD@
DYLIB_LDFLAGS = @DYLIB_LDFLAGS@
DYLIB_LDFLAGS = @DYLIB_LDFLAGS@@BUILD_LTO_TRUE@ $(DYLIBS_LTO)
DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS)
DYLIBS_LTO = $(CFLAGS) $(CPICFLAGS)
ECHO = echo
ECHO_C = @ECHO_C@
ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
FFLAGS = @FFLAGS@
FFLAGS = @FFLAGS@ @LTO@
FLIBS = @FLIBS@
FLIBS_IN_SO = @FLIBS_IN_SO@
FPICFLAGS = @FPICFLAGS@
......@@ -48,7 +48,6 @@ JAVA_HOME = @JAVA_HOME@
JAVA_LD_LIBRARY_PATH = @JAVA_LD_LIBRARY_PATH@
JAVA_LIBS = @JAVA_LIBS0@
JAVAC = @JAVAC@
LATEX = @LATEX@
LDFLAGS = @LDFLAGS@
LIBINTL= @LIBINTL@
LIBM = @LIBM@
......@@ -56,17 +55,16 @@ LIBR = @LIBR@
LIBS = @LIBS@
LIBnn = @LIBnn@
LIBTOOL = @LIBTOOL@
## AFAICS unused
LN_S = @LN_S@
MAIN_CFLAGS = @MAIN_CFLAGS@
MAIN_FFLAGS = @MAIN_FFLAGS@
MAIN_LD = @MAIN_LD@
MAIN_LD = @MAIN_LD@@BUILD_LTO_TRUE@ $(CFLAGS)
MAIN_LDFLAGS = @MAIN_LDFLAGS@ @WANT_R_SHLIB_FALSE@ @USE_EXPORTFILES_TRUE@ -Wl,-bE:$(top_builddir)/etc/R.exp
MAIN_LINK = $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS)
## need this for bootstrapping
MKINSTALLDIRS = @R_SHELL@ $(top_srcdir)/src/scripts/mkinstalldirs.in
NOTANGLE = @NOTANGLE@
OBJC = @OBJC@
OBJCFLAGS = @OBJCFLAGS@
R_ARCH = @R_ARCH@
R_FRAMEWORK_DIR = $(prefix)/R.framework
R_GZIPCMD = @R_GZIPCMD@
......@@ -89,8 +87,9 @@ SHLIB_EXT = @SHLIB_EXT@
SHLIB_CFLAGS = @SHLIB_CFLAGS@
SHLIB_FFLAGS = @SHLIB_FFLAGS@
SHLIB_LD = @SHLIB_LD@
SHLIB_LDFLAGS = @SHLIB_LDFLAGS@
SHLIB_LDFLAGS = @SHLIB_LDFLAGS@@BUILD_LTO_TRUE@ $(SHLIB_LTO)
SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS)
SHLIB_LTO = $(CFLAGS) $(CPICFLAGS)
STRIP_LIBS = @striplib@
STRIP_STATIC_LIBS = @stripstaticlib@
TAR = @TAR@
......@@ -104,7 +103,6 @@ YACC = @YACC@
ALL_CFLAGS = $(R_XTRA_CFLAGS) $(R_OPENMP_CFLAGS) $(MAIN_CFLAGS) $(CFLAGS)
ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) $(CPPFLAGS) $(DEFS)
ALL_FFLAGS = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(MAIN_FFLAGS) $(FFLAGS)
ALL_OBJCFLAGS = $(R_XTRA_OBJCFLAGS) $(MAIN_OBJCFLAGS) $(OBJCFLAGS)
ALL_CFLAGS_LO = $(R_XTRA_CFLAGS) $(R_OPENMP_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
ALL_FFLAGS_LO = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
......@@ -114,7 +112,6 @@ ALL_FFLAGS_LO = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS)
@r_cc_rules_frag@
.f.o:
$(F77) $(ALL_FFLAGS) -c $< -o $@
@r_objc_rules_frag@
prefix = @prefix@
exec_prefix = @exec_prefix@
......
This diff is collapsed.
No preview for this file type
Revision: 58522
Last Changed Date: 2012-02-29
Revision: 58871
Last Changed Date: 2012-03-30
This diff is collapsed.
......@@ -30,7 +30,7 @@ m4_define([R_VERSION],
m4_bpatsubst(m4_esyscmd([cat VERSION]),
[\([0-9.]*\)\(\w\|\W\)*],
[\1]))
AC_INIT([R],[R_VERSION],[r-bugs@R-project.org],[R])
AC_INIT([R],[R_VERSION],[http://bugs.r-project.org],[R],[http://www.r-project.org])
AC_CONFIG_SRCDIR([src/include/Defn.h])
AC_CONFIG_AUX_DIR([tools])
......@@ -324,6 +324,21 @@ AC_ARG_ENABLE([prebuilt-html],
AM_CONDITIONAL(BUILD_HTML, [test "x${want_prebuilt_html}" = xyes])
AC_ARG_ENABLE([lto],
[AS_HELP_STRING([--enable-lto],[enable link-time optimization @<:@no@:>@])],
[want_lto="${enableval}"], [want_lto=no])
## FIXME: add a test for gcc >= 4.5.0
if test "x${want_lto}" != xno; then
LTO=-flto
fi
if test "x${want_lto}" == xyes; then
LTOALL=-flto
fi
AC_SUBST(LTO)
AC_SUBST(LTOALL)
AM_CONDITIONAL(BUILD_LTO, [test "x${want_lto}" != xno])
### ** Optional packages.
## BLAS.
......@@ -1783,7 +1798,8 @@ R_CHECK_FUNCS([utime], [#include <utime.h>])
## clock_gettime is POSIX 1993, but not on MacOS X
## Some OSes need -lrt: Linux, Solaris, not FreeBSD.
## Unsurprising, as POSIX 2008 moved it from its timers section to base.
R_CHECK_FUNCS([clock_gettime], [#include <time.h>])
## timespec_get is C11.
R_CHECK_FUNCS([clock_gettime timespec_get], [#include <time.h>])
if test "${ac_cv_have_decl_clock_gettime}" = "yes"; then
AC_CHECK_LIB(rt, clock_gettime)
fi
......@@ -2749,12 +2765,6 @@ fi
if test -n "${warn_tcltk_version}"; then
AC_MSG_WARN([${warn_tcltk_version}])
fi
if test -n "${warn_dvi1}"; then
AC_MSG_WARN([${warn_dvi1}])
fi
if test -n "${warn_dvi2}"; then
AC_MSG_WARN([${warn_dvi2}])
fi
if test -n "${warn_info}"; then
AC_MSG_WARN([${warn_info}])
fi
......
......@@ -300,10 +300,11 @@ src/main/dounzip.c, unzip.h
src/extra/pcre/LICENCE
src/extra/pcre/*.[ch]
src/main/valid_utf8.h
Copyright (c) 1997-2011 University of Cambridge
Copyright (c) 1997-2012 University of Cambridge
All rights reserved.
Copyright(c) 2009-2011 Zoltan Herczeg
Copyright(c) 2009-2012 Zoltan Herczeg
See file src/extra/pcre/LICENCE. For binary builds of R that requires
us to include
......
......@@ -18,6 +18,7 @@ Chile,Chile,Santiago,http://dirichlet.mat.puc.cl/,"Pontificia Universidad Catoli
"China (Beijing 1)",China,Bejing,http://ftp.ctex.org/mirrors/CRAN/,CTEX.ORG,"Aloft Wu <aloft # ctex.org>",1,cn
"China (Beijing 2)",China,Bejing,http://cran.csdb.cn/,"Computer Network Information Center, CAS, Beijing","Hull # cnic.cn",1,cn
"China (Beijing 3)",China,Bejing,http://mirror.bjtu.edu.cn/cran,"Beijing Jiaotong University, Beijing","idealities # gmail.com",1,cn
"China (Guangzhou)",China,Guangzhou,http://cran.dataguru.cn,"Dataguru (a, Guangzhou","dataguru # 139.com",1,cn
"China (Hefei)",China,Hefei,http://mirrors.ustc.edu.cn/CRAN/,"University of Science and Technology of China","mirrors # Ustc.edu.cn",1,cn
"China (Xiamen)",China,Xiamen,http://mirrors.xmu.edu.cn/CRAN/,"Xiamen University","admin # Xdmc.org",1,cn
"Colombia (Bogota)",Colombia,Bogota,http://www.laqee.unal.edu.co/CRAN/,"National University of Colombia","Ernesto Parra Rincon <eparrar # unal.edu.co>",1,co
......@@ -28,7 +29,6 @@ Denmark,Denmark,Aalborg,http://mirrors.dotsrc.org/cran/,"dotsrc.org, Aalborg","m
"France (Lyon 2)",France,Lyon,http://mirror.ibcp.fr/pub/CRAN/,"CNRS IBCP, Lyon","alexis.michon # ibcp.fr",1,fr
"Germany (Berlin)",Germany,Berlin,http://mirrors.softliste.de/cran/,"Softliste.de, Berlin","docko # docko.sk",1,de
"Germany (Goettingen)",Germany,Goettingen,http://ftp5.gwdg.de/pub/misc/cran/,"GWDG Goettingen","Eberhard Moenkeberg <emoenke # gwdg.de>",1,de
"Germany (Muenchen)",Germany,Muenchen,http://cran.rakanu.com/,"Rakanu.com, Muenchen","Carsten Zedler <info # rakanu.com>",1,de
"Germany (Wiesbaden)",Germany,Wiesbaden,http://ftp.yalwa.org/cran/,"Yalwa GmbH, Wiesbaden","webmaster # yalwa.com",1,de
Greece,Greece,Crete,http://cran.cc.uoc.gr/,"University of Crete","mirrors # Cc.uoc.gr",1,gr
India,India,Chennai,http://ftp.iitm.ac.in/cran/,"Indian Institute of Technology Madras","sriram # iitm.ac.in",1,in
......@@ -42,8 +42,8 @@ Ireland,Ireland,Dublin,http://ftp.heanet.ie/mirrors/cran.r-project.org/,"HEAnet,
"Japan (Hyogo)",Japan,Hyogo,http://essrc.hyogo-u.ac.jp/cran/,"Hyogo University of Teacher Education","essrc-cran # hyogo-u.ac.jp",1,jp
"Japan (Tsukuba)",Japan,Tsukuba,http://cran.md.tsukuba.ac.jp/,"University of Tsukuba",,1,jp
"Japan (Tokyo)",Japan,Tokyo,http://cran.ism.ac.jp/,"Institute of Statistical Mathematics, Tokyo","Junji Nakano <nakanoj # ism.ac.jp>",1,jp
Korea,Korea,Seoul,http://statlab.korea.ac.kr/R/,"Korea University","hanansh # Korea.ac.kr",0,kr
Korea,Korea,Seoul,http://cran.nexr.com/,"NexR Cortporation, Seoul","mining # nexr.com",1,kr
Latvia,Latvia,Riga,http://mirrors.webhostinggeeks.com/cran/,Webhostinggeeks,"whg.igp # gmail.com",1,lv
"Mexico (Mexico City)",Mexico,"Mexico City",http://cran.itam.mx/,"Instituto Tecnologico Autonomo de Mexico","Ernesto Barrios <ebarrios # Itam.mx>",1,mx
"Mexico (Texcoco)",Mexico,Texcoco,http://www.est.colpos.mx/R-mirror/,"Colegio de Postgraduados, Texcoco","perpdgo # colpos.mx",1,mx
"Netherlands (Amsterdam)",Netherlands,Amsterdam,http://cran.xl-mirror.nl/,"XL-Data, Amsterdam","werner # xl-mirror.nl",1,nl
......@@ -62,22 +62,19 @@ Singapore,Singapore,Singapore,http://cran.stat.nus.edu.sg/,"National University
Sweden,Sweden,Uppsala,http://ftp.sunet.se/pub/lang/CRAN/,"Swedish University Computer Network, Uppsala","Goran Brostrom <gb # stat.umu.se>",1,se
Switzerland,Switzerland,Zuerich,http://stat.ethz.ch/CRAN/,"ETH Zuerich","Martin.Maechler # R-project.org",1,ch
"Taiwan (Taichung)",Taiwan,Taichung,http://cran.cs.pu.edu.tw/,"Providence University, Taichung","hcchang # cs.pu.edu.tw",1,tw
"Taiwan (Taipei 1)",Taiwan,Taipei,http://cran.csie.ntu.edu.tw/,"National Taiwan University, Taipei","Rong-En Fan <rafan # infor.org>",1,tw
"Taiwan (Taipei 2)",Taiwan,Taipei,http://cran.stat.tku.edu.tw/,"Tamkang University, Taipei","steve # stat.tku.edu.tw",0,tw
"Taiwan (Taipei)",Taiwan,Taipei,http://cran.csie.ntu.edu.tw/,"National Taiwan University, Taipei","Rong-En Fan <rafan # infor.org>",1,tw
Thailand,Thailand,Hatyai,http://mirrors.psu.ac.th/pub/cran/,"Prince of Songkla University, Hatyai","wipat.s # psu.ac.th",1,th
"UK (Bristol)",UK,Bristol,http://www.stats.bris.ac.uk/R/,"University of Bristol","Guy Nason <G.P.Nason # bristol.ac.uk>",1,uk
"UK (London)",UK,London,http://cran.ma.imperial.ac.uk/,"Imperial College London","s.rochford # imperial.ac.uk",1,uk
"UK (St Andrews)",UK,"St Andrews",http://star-www.st-andrews.ac.uk/cran/,"St Andrews University","Lee Kelvin <lsk9 # St-andrews.ac.uk>",1,uk
"USA (AZ)",USA,Scottsdale,http://cran.opensourceresources.org/,opensourceresources.org,"mike.winslow1 # gmail.com",1,us
"USA (AZ)",USA,Scottsdale,http://cran.opensourceresources.org/,opensourceresources.org,"mike.winslow1 # gmail.com",0,us
"USA (CA 1)",USA,Berkeley,http://cran.cnr.Berkeley.edu,"University of California, Berkeley, CA","casterln # nature.berkeley.edu",1,us
"USA (CA 2)",USA,"Los Angeles",http://cran.stat.ucla.edu/,"University of California, Los Angeles, CA","Jose Hales-Garcia <jose # stat.ucla.edu>",1,us
"USA (IA)",USA,Ames,http://streaming.stat.iastate.edu/CRAN/,"Iowa State University, Ames, IA","Ted Peterson <cpterson # iastate.edu>",1,us
"USA (KS)",USA,Lawrence,http://rweb.quant.ku.edu/cran/,"University of Kansas, Lawrence, KS","Paul Johnson <pauljohn # ku.edu>",1,us
"USA (MA)",USA,Cambridge,http://software.rc.fas.harvard.edu/mirrors/R/,"Harvard University, Cambridge, MA","Chris Walker <cwalker # fas.harvard.edu>",1,us
"USA (MD)",USA,Bethesda,http://watson.nci.nih.gov/cran_mirror/,"National Cancer Institute, Bethesda, MD","Sean Davis <sdavis2 # mail.nih.gov>",1,us
"USA (MI)",USA,Houghton,http://cran.mtu.edu/,"Michigan Technological University, Houghton, MI","Robert Froese <froese # mtu.edu>",1,us
"USA (MO)",USA,"St. Louis",http://cran.wustl.edu/,"Washington University, St. Louis, MO","admartin # wustl.edu",1,us
"USA (NC)",USA,"Chapel Hill",http://www.ibiblio.org/pub/languages/R/CRAN/,"University of North Carolina, Chapel Hill, NC","""Nancy C. Wilson"" <nancy # metalab.unc.edu>",0,us
"USA (OH)",USA,Cleveland,http://cran.case.edu/,"Case Western Reserve University, Cleveland, OH","""Alberto H. Santana"" <ahs4 # case.edu>",1,us
"USA (OR)",USA,Corvallis,http://ftp.osuosl.org/pub/cran/,"Oregon State University","support # Osuosl.org",1,us
"USA (PA 1)",USA,Pittsburgh,http://lib.stat.cmu.edu/R/CRAN/,"Statlib, Carnegie Mellon University, Pittsburgh, PA",,1,us
......
R FAQ
Frequently Asked Questions on R
Version 2.14.2012-02-23
Version 2.15.2012-03-29
ISBN 3-900051-08-9
Kurt Hornik
......@@ -165,7 +165,7 @@ and give the above, _official_ URL and the ISBN 3-900051-08-9:
@Misc{,
author = {Kurt Hornik},
title = {The {R} {FAQ}},
year = {2011},
year = {2012},
note = {{ISBN} 3-900051-08-9},
url = {http://CRAN.R-project.org/doc/FAQ/R-FAQ.html}
}
......@@ -185,7 +185,7 @@ Feedback via email to <Kurt.Hornik@R-project.org> is of course most welcome.
systems. Features specific to the Windows and Mac OS X ports of R are
described in the "R for Windows FAQ"
(http://CRAN.R-project.org/bin/windows/base/rw-FAQ.html) and the "R for Mac
OS X FAQ (http://CRAN.R-project.org/bin/macosx/RMacOSX-FAQ.html). If you
OS X FAQ" (http://CRAN.R-project.org/bin/macosx/RMacOSX-FAQ.html). If you
have information on Macintosh or Windows systems that you think should be
added to this document, please let me know.
......@@ -258,7 +258,7 @@ i386-freebsd, rs6000-ibm-aix, and sparc-sun-solaris.
2.3 What is the current version of R?
=====================================
The current released version is 2.14.2. Based on this
The current released version is 2.15.0. Based on this
`major.minor.patchlevel' numbering scheme, there are two development
versions of R, a patched version of the current release (`r-patched') and
one working towards the next minor or eventually major (`r-devel') releases
......@@ -392,11 +392,11 @@ port of R for Macintosh is no longer supported.
The `bin/linux' directory of a CRAN site contains the following packages.
CPU Versions Provider
-----------------------------------------------------------------------
Debian i386/amd64 etch/lenny/squeeze Johannes Ranke
Red Hat i386/x86_64 fedora10/fedora11 Martyn Plummer
Ubuntu i386/amd64 hardy/lucid/maverick/natty Michael Rutter
CPU Versions Provider
------------------------------------------------------------------------------
Debian i386/amd64 etch/lenny/squeeze Johannes Ranke
Red Hat i386/x86_64 fedora10/fedora11 Martyn Plummer
Ubuntu i386/amd64 hardy/lucid/maverick/natty/oneiric Michael Rutter
Debian packages, maintained by Dirk Eddelbuettel, have long been part of
the Debian distribution, and can be accessed through APT, the Debian
......@@ -530,7 +530,7 @@ To cite R in publications, use
author = {{R Development Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},