Commit 2f892f8c authored by Radford Neal's avatar Radford Neal

Files from R-2.13.0.

parent 4923806c

Too many changes to show.

To preserve performance only 1000 of 1000+ files are displayed.

......@@ -11,7 +11,6 @@ ACLOCAL = @ACLOCAL@
AUTOCONF = @AUTOCONF@
AUTOMAKE = @AUTOMAKE@
AUTOHEADER = @AUTOHEADER@
AWK = @AWK@
BLAS_LIBS = @BLAS_LIBS@
BUILDDIR_IS_SRCDIR = @BUILDDIR_IS_SRCDIR@
## next two for future support of cross-compiling, not actually used
......@@ -34,6 +33,7 @@ ECHO_N = @ECHO_N@
ECHO_T = @ECHO_T@
FFLAGS = @FFLAGS@
FLIBS = @FLIBS@
FLIBS_IN_SO = $(FLIBS)
FPICFLAGS = @FPICFLAGS@
F77 = @F77@
GETWD = @GETWD@
......@@ -64,7 +64,7 @@ MAIN_LDFLAGS = @MAIN_LDFLAGS@ @WANT_R_SHLIB_FALSE@ @USE_EXPORTFILES_TRUE@ -Wl,-b
MAIN_LINK = $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS)
## need this for bootstrapping
MKINSTALLDIRS = @R_SHELL@ $(top_srcdir)/src/scripts/mkinstalldirs.in
PERL = @PERL@
NOTANGLE = @NOTANGLE@
OBJC = @OBJC@
OBJCFLAGS = @OBJCFLAGS@
R_ARCH = @R_ARCH@
......@@ -72,10 +72,12 @@ R_FRAMEWORK_DIR = $(prefix)/R.framework
R_GZIPCMD = @R_GZIPCMD@
## needed for AIX only
@USE_EXPORTFILES_TRUE@ R_HOME = $(top_builddir)
R_OPENMP_CFLAGS = @R_OPENMP_CFLAGS@
R_OPENMP_FFLAGS = @R_OPENMP_FFLAGS@
R_OSTYPE = @R_OSTYPE@
R_PKGS = $(R_PKGS_BASE) @USE_RECOMMENDED_PACKAGES_TRUE@ $(R_PKGS_RECOMMENDED)
R_PLATFORM = @R_PLATFORM@
R_XTRA_CFLAGS = @R_XTRA_CFLAGS@
R_XTRA_CFLAGS = @R_XTRA_CFLAGS@
R_XTRA_CPPFLAGS = @R_XTRA_CPPFLAGS@ -I. -I$(top_builddir)/src/include -I$(top_srcdir)/src/include
R_XTRA_FFLAGS = @R_XTRA_FFLAGS@
R_XTRA_LIBS = @R_XTRA_LIBS@
......@@ -92,7 +94,6 @@ SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS)
STRIP_LIBS = @striplib@
STRIP_STATIC_LIBS = @stripstaticlib@
TAR = @TAR@
TR = @TR@
USE_NLS = @USE_NLS@
X_CFLAGS = @X_CFLAGS@
X_LIBS = @X_LIBS@
......@@ -100,12 +101,12 @@ X_PRE_LIBS = @X_PRE_LIBS@
X_EXTRA_LIBS = @X_EXTRA_LIBS@
YACC = @YACC@
ALL_CFLAGS = $(R_XTRA_CFLAGS) $(MAIN_CFLAGS) $(CFLAGS)
ALL_CFLAGS = $(R_XTRA_CFLAGS) $(R_OPENMP_CFLAGS) $(MAIN_CFLAGS) $(CFLAGS)
ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) $(CPPFLAGS) $(DEFS)
ALL_FFLAGS = $(R_XTRA_FFLAGS) $(MAIN_FFLAGS) $(FFLAGS)
ALL_FFLAGS = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(MAIN_FFLAGS) $(FFLAGS)
ALL_OBJCFLAGS = $(R_XTRA_OBJCFLAGS) $(MAIN_OBJCFLAGS) $(OBJCFLAGS)
ALL_CFLAGS_LO = $(R_XTRA_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
ALL_FFLAGS_LO = $(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
ALL_CFLAGS_LO = $(R_XTRA_CFLAGS) $(R_OPENMP_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
ALL_FFLAGS_LO = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
.SUFFIXES:
.SUFFIXES: .c .f .m .d .o
......
......@@ -189,8 +189,8 @@ distdir: $(DISTFILES) vignettes
| (cd $(distdir); $(TAR) -x -f -)) \
|| exit 1; \
done
@cp library/grid/doc/*.pdf library/grid/doc/index.html \
$(distdir)/src/library/grid/inst/doc
@cp library/grid/doc/*.pdf $(distdir)/src/library/grid/inst/doc
@cp library/utils/doc/*.pdf $(distdir)/src/library/utils/inst/doc
@(cd $(distdir); tools/link-recommended)
dvi info pdf:
......@@ -214,5 +214,23 @@ check check-devel check-all check-recommended:
reset-recommended:
@(cd src/library/Recommended && $(MAKE) clean)
## This is a temporary target -- we'll do a better job soon
bytecode: all
@if test ! -e $(top_builddir)/library/compiler; \
then $(ECHO) "install the compiler first"; exit 1; fi
exit
@for pkg in $(R_PKGS_BASE); do \
$(ECHO) compiling code in package \"$${pkg}\"; \
touch $(top_builddir)/src/library/$${pkg}/all.R; \
(cd $(top_builddir)/src/library/$${pkg}; \
R_COMPILE_PKGS=1 R_COMPILER_SUPPRESS_ALL=1 $(MAKE)) \
done
@for pkg in $(R_PKGS_RECOMMENDED); do \
$(ECHO) compiling code in package \"$${pkg}\"; \
R_COMPILE_PKGS=1 R_COMPILER_SUPPRESS_ALL=1 \
$(top_builddir)/bin/R CMD INSTALL \
-l $(top_builddir)/library \
$(srcdir)/src/library/Recommended/$${pkg}.tgz; \
done
TAGS:
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Revision: 54585
Last Changed Date: 2011-02-25
Revision: 55427
Last Changed Date: 2011-04-13
......@@ -54,7 +54,6 @@
## Defines for C compilation.
## Use this to specify defines to be used in the compilation of R,
## e.g. -DUSE_TYPE_CHECKING_STRICT
## DEFS=
## The following additional CFLAGS to be used only in the main
......@@ -233,3 +232,8 @@
## archives in a non-POSIX format that untar() cannot read,
## so should be avoided.
## TAR=
## Library path
## This is be default created from libraries added to LIBS.
## Allow user to override.
## R_LD_LIBRARY_PATH=
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......@@ -6,15 +6,18 @@ Development Core Team.
See the file COPYING for the exact conditions under which you may
redistribute it. R as a whole is distributed under GPL version 2:
most source files contain a copyright statement allow use of that file
under GPL version 2 or later: the main exceptions are packages 'rpart'
and 'survival' (GPL-2 only) and packages 'MASS', 'class', 'nnet' and
'spatial' (GPL-2 or GPL-3).
most source files contain a copyright statement allowing use of that
file under GPL version 2 or later: the main exceptions are the
currently included versions of packages 'rpart' (GPL-2 only), 'MASS',
'class', 'nnet' and 'spatial' (GPL-2 or GPL-3).
The status of files used only in the Windows port is in file
src/gnuwin32/COPYRIGHTS.win, which is appended to this file in binary
Windows distributions.
Note that all the code *is* copyright and may only be reproduced if
the copyright notice (that in the file or this notice) is preserved.
---------------------------------------------------
Some of the public header files are distributed under the more
......@@ -64,7 +67,8 @@ src/library/stats/src/PPsum.c
Some of the code contains different copyright statements. It is used
here in accordance with the copyright conditions in that code.
here in accordance with the copyright conditions in that code. A
not-necessarily-complete list of such files is:
src/library/grDevices/inst/afm/*___.afm
......@@ -101,7 +105,11 @@ in part
Copyright (C) 1997 R. Gentleman & R. Ihaka
Copyright (C) 1997, 1998 M. Maechler
share/bibtex/bst/jss.bst
shares/licenses/*
See the individual files.
share/texmf/bibtex/bst/jss.bst
Copyright 1994-2005 Patrick W Daly
......@@ -116,7 +124,7 @@ share/texmf/tex/latex/upquote.sty
src/library/graphics/R/mosaicplot.R
Copyright (C) 1998 John W. Emerson
Original code copyright (C) 1998 John W. Emerson
src/library/graphics/R/pairs.R
......@@ -126,7 +134,19 @@ src/library/graphics/R/polygon.R
Copyright (C) 2001 by Kevin Buhr <buhr@stat.wisc.edu>
src/library/splines/R/splineClasses.R
Copyright (C) 1998 Douglas M. Bates and William N. Venables.
src/library/datasets/man/austres.Rd
src/library/datasets/man/beavers.Rd
src/library/datasets/man/lh.Rd
src/library/datasets/man/rock.Rd
src/library/datasets/man/UKLungDeaths.Rd
src/library/datasets/man/USAccDeaths.Rd
src/library/stats/R/bandwidths.R
src/library/stats/R/cpgram.R
src/library/stats/R/spectrum.R
src/library/stats/src//bandwidths.c
src/appl/maxcol.c
......@@ -167,10 +187,16 @@ src/library/stats/R/zzModels.R
Copyright 1997,1999 Jose C. Pinheiro
src/library/stats/R/runmed.R
src/library/stats/src/Trunmed.c
In part Copyright (C) 1995 Berwin A. Turlach
src/library/stats/src/loessc.c
src/library/stats/src/loessf.f
In part Copyright (c) 1989, 1992 by AT&T
src/library/tcltk/exec/{hierarchy,util*,widget}.tcl
Copyright (c) various dates Jeffrey Hobbs
......@@ -267,7 +293,7 @@ src/extra/xdr/*
src/extra/zlib/README, *.c, *.h
Taken from zlib-1.2.3 (C) 1995-2010 Jean-loup Gailly and Mark Adler
Taken from zlib-1.2.3 (C) 1995-2005 Jean-loup Gailly and Mark Adler
See src/extra/zlib/README for the licence.
......
R FAQ
Frequently Asked Questions on R
Version 2.12.2011-02-22
Version 2.13.2011-04-07
ISBN 3-900051-08-9
Kurt Hornik
......@@ -255,7 +255,7 @@ i386-freebsd, rs6000-ibm-aix, and sparc-sun-solaris.
2.3 What is the current version of R?
=====================================
The current released version is 2.12.2. Based on this
The current released version is 2.13.0. Based on this
`major.minor.patchlevel' numbering scheme, there are two development
versions of R, a patched version of the current release (`r-patched') and
one working towards the next minor or eventually major (`r-devel') releases
......
......@@ -18,7 +18,7 @@ DISTFILES = Makefile.in Makefile.win $(INSTFILES) R.aux Rscript.1 NEWS.Rd
NON_SVN_INSTFILES = FAQ RESOURCES
SUBDIRS = html manual
HELP2MAN = $(PERL) $(top_srcdir)/tools/help2man.pl
HELP2MAN = perl $(top_srcdir)/tools/help2man.pl
R_EXE = $(top_builddir)/bin/R --vanilla --slave
......@@ -43,7 +43,7 @@ R.1:
$(top_builddir)/bin/R
NEWS.rds: $(srcdir)/NEWS.Rd
@$(ECHO) ".saveRDS(tools:::prepare_Rd(tools::parse_Rd(\"$(srcdir)/NEWS.Rd\"), stages = 'install'), 'NEWS.rds')" | $(R_EXE)
@$(ECHO) "options(warn=1);.saveRDS(tools:::prepare_Rd(tools::parse_Rd(\"$(srcdir)/NEWS.Rd\"), stages = 'install'), 'NEWS.rds')" | $(R_EXE)
../NEWS: NEWS.rds
@$(ECHO) "creating NEWS"
......
......@@ -15,7 +15,7 @@ NEWS.rds: NEWS.Rd
@$(ECHO) ".saveRDS(tools:::prepare_Rd(tools::parse_Rd(\"$<\"), stages = \"install\"), \"$@\")" | $(R_EXE)
CHANGES.rds: ../src/gnuwin32/CHANGES.Rd
@$(ECHO) ".saveRDS(tools:::prepare_Rd(tools::parse_Rd(\"$<\"), stages = \"install\"), \"$@\")" | $(R_EXE)
@$(ECHO) "options(warn=1);.saveRDS(tools:::prepare_Rd(tools::parse_Rd(\"$<\"), stages = \"install\"), \"$@\")" | $(R_EXE)
## Force ASCII output, for portability on Windows
../NEWS: NEWS.rds
......
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......@@ -2,17 +2,17 @@ R would not be what it is today without the invaluable help of these
people, who contributed by donating code, bug fixes and documentation:
Valerio Aimale, Thomas Baier, Roger Bivand, Ben Bolker, David Brahm,
Goran Brostrom, Patrick Burns, Vince Carey, Saikat DebRoy,
Goran Brostrom, Patrick Burns, Vince Carey, Saikat DebRoy,