specifying namespace for using 'stack'

R/factorLoadingHeatmap.R

@@ -102,7 +102,7 @@ factorLoadingHeatmap <- function(fa,
   }
 
   tmpDf <-
-    stack(loadings);
+    utils::stack(loadings);
 
   tmpDf$Variable <-
     factor(

man/associationsDiamondPlot.Rd

@@ -29,7 +29,7 @@ associationsDiamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   ...
 )
 

man/biAxisDiamondPlot.Rd

@@ -30,7 +30,7 @@ biAxisDiamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   ...
 )
 }

man/comparisonDiamondPlots.Rd

@@ -34,7 +34,7 @@ duoComparisonDiamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   ...
 )
 
@@ -65,7 +65,7 @@ meansComparisonDiamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   ...
 )
 }

man/diamondPlot.Rd

@@ -21,7 +21,7 @@ diamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   ...
 )
 }

man/meanSDtoDiamondPlot.Rd

@@ -16,7 +16,7 @@ meanSDtoDiamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   ...
 )
 }

man/meansDiamondPlot.Rd

@@ -25,7 +25,7 @@ meansDiamondPlot(
   outputFile = NULL,
   outputWidth = 10,
   outputHeight = 10,
-  ggsaveParams = list(units = "cm", dpi = 300, type = "cairo"),
+  ggsaveParams = ufs::opts$get("ggsaveParams"),
   dat = NULL,
   ...
 )