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* [protein id/name → history](#protein-idname-history) (proteinortho_history.pl)
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* [two proteinortho-graph files → difference](#two-proteinortho-graph-files-difference) (proteinortho_compareProteinorthoGraphs.pl)
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* [proteinortho.tsv → singletons](#proteinorthotsv-singletons) (proteinortho_singltons.pl)
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* [proteinortho-graph/blast-graph → species summary table](#proteinortho_history) (proteinortho_history.pl)
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* [proteinortho-graph/blast-graph → species summary table](#proteinortho-graphblast-graph-species-summary-table) (proteinortho_history.pl)
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[Internal programs](#internal-programs)
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