... | ... | @@ -16,7 +16,8 @@ incoming+paulklemm-phd-proteinortho-7278443-issue-@incoming.gitlab.com |
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[2.1 cannot find XYZ](#21-cannot-find-xyz)<br>
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[2.2 Failed to detect ...](#22-failed-to-detect-)<br>
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[2.3 'proteinortho_clustering' failed with code 32256 / cannot execute binary file](#23-proteinortho_clustering-failed-with-code-32256-cannot-execute-binary-file)<br>
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[2.4 No coordinate found for ... gene(s)](#24-no-coordinate-found-for-genes)<br>
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[2.4 'proteinortho_clustering' failed with code 33792](#24-proteinortho_clustering-failed-with-code-33792)<br>
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[2.5 No coordinate found for ... gene(s)](#25-no-coordinate-found-for-genes)<br>
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##
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# 1. Make errors
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... | ... | @@ -196,9 +197,34 @@ B. specify the binary path with the -binpath, make sure that all needed binaries |
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<br>*Solution*:<br>
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Recompile proteinortho with `make clean` and `make all` This should resolve your error (if proteinortho_clustering does not compile look at the corresponding error in chapter 1)<br>
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## 2.4 'proteinortho_clustering' failed with code 33792
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> Step 3
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> Clustering by similarity (Proteinortho mode) using up to 40000 MB of memory and 12 cpu core(s). Adjust this behaviour with the -mem option.
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> Reading myproject.blast-graph
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> 2 species
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> 93112312912399 paired proteins
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> 481923999000201123959 bidirectional edges
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> Illegal instruction
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> Parameter-vector : (...)
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> [Error] 'proteinortho_clustering' failed with code 33792
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> ...
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*Reason*:<br> Your machine architecture is not compatible with -mtune and -march<br> Version v6.0.17 was set up to directly compile using -mtune and -march.
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<br>*Solution*:<br>
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Please upgrade to v6.0.18 or later. In these version the -mtune and -march are optional. You can enable these with the make file `make MTUNEARCH=TRUE all`.
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## 2.4 No coordinate found for ... gene(s)
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## 2.5 No coordinate found for ... gene(s)
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> [Error] No coordinate found for 3891 gene(s): 'sp|A1KIL2|WHIA_MYCBP,tr|A0A0H3MAE9|A0A0H3MAE9_MYCBP,tr|A0A0H3M2F6|A0A0H3M2F6_MYCBP,sp|A1KM74|RECX_MY...'
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