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Last edited by Paul Klemm
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Continuous Integration

The CI of this project test the following:

  • latest gcc docker with topaz+diamond: recompile proteinortho and make test
  • latest gcc docker with topaz+diamond: make test without any compiling (static)
  • latest gcc docker with diamond: recompile proteinortho without LAPACK (make LAPACK=FALSE) and make test
  • gcc:5 (gcc version 5) docker with topaz+diamond: recompile proteinortho and make test
  • latest ubuntu docker with topaz+diamond: recompile proteinortho and make test
  • latest debian docker with topaz+diamond: recompile proteinortho and make test
  • latest centos docker with topaz+diamond: make test (static)

The CI badge is green if and only if all tests are passed with no error.

the yml file

variables: PROJECT_NAME: "Proteinortho" before_script:

  • echo "starting yml for Proteinortho"
  • apt-get -y update && apt-get -y install cmake && apt-get -y install wget && apt-get -y install ncbi-blast+ && apt-get -y install time && apt-get -y install git stages:
  • buildtest

buildtest-gcc-latest: image: gcc stage: buildtest script:

static-gcc-latest: image: gcc stage: buildtest script:

nolapack-gcc-latest: image: gcc stage: buildtest script:

buildtest-without-lapack: image: gcc stage: buildtest script:

  • echo "start proteinortho tests"
  • make USELAPACK=FALSE
  • make clean
  • make test

buildtest-gcc5: image: gcc:5 stage: buildtest script:

buildtest-ubuntu-latest: image: ubuntu stage: buildtest script:

buildtest-debian-latest: image: debian stage: buildtest script:

test-centos-latest: image: centos stage: buildtest script: