v3.0.0-alpha3 to v3.0.0-alpha4 · OpenFlexure / openflexure-microscope-server · GitLab

Commits on Source 292

58b0c795 Centre stitching header
Jun 27, 2025
416830cb Strip new lines when logging stitching
Oct 10, 2025
841c340c Scan data card centres lists, displays duration
Oct 14, 2025
fb3658c9 Colour sliders in seadragon viewer
Oct 16, 2025
19913b8f Limit brightness and contrast, move sliders to high z to avoid collisions
Oct 16, 2025
3d3ca9eb Merge branch 'log-lines' into 'v3'
Oct 17, 2025
eb01aaf0 Completes all necessary movements along a single axis
Oct 17, 2025
e0b086bd Added parisitic motion detect, z prediction and saved results
Oct 17, 2025
71e21d1e Step range and all other data is saved to stage_measure thing
Oct 17, 2025
0267251a Move and measure and z predict are now separate functions
Oct 17, 2025
725f9933 Typehints and docstrings added
Oct 17, 2025
0bf3b421 Added stage measure to config list
Oct 17, 2025
15487014 Optional autofocus and other minor tweaks
Oct 17, 2025
ada120db Minor tweaks to z_pred and lowered tolerance for failure
Oct 17, 2025
b90ecf8c Motion detection is now a function and a few other minor tweaks
Oct 17, 2025
e3273055 Docstring added
Oct 17, 2025
e74ac9d8 Improved docstrings and type hints.
Oct 17, 2025
61c38772 Removed the need for steps_generate function
Oct 17, 2025
23d53949 Small moves and medium moves are now in separate functions
Oct 17, 2025
1c7527c2 Parisitic motion is now tracked with an exception
Oct 17, 2025
d494761c Updated docstrings and fixed ruff errors
Oct 17, 2025
38906c8f Moved quadratic function to utilities file
Oct 17, 2025
f7264441 Updated labthings dependencies
Oct 17, 2025
703e8293 Rom data is now saved to settings.json
Oct 17, 2025
47bc1479 Changed function names.
Oct 17, 2025
db0dc112 Tracking correlations and stage coordinates with class now.
Oct 17, 2025
63bd34f5 Removed focus_data
Oct 17, 2025
4106d034 Delta is tracked with class now
Oct 17, 2025
f0a67bac Type set and added default values to data tracker class
Oct 17, 2025
d035b186 Updated docstrings
Oct 17, 2025
8ce7f9f7 Removed empty lines
Oct 17, 2025
32129125 Fixed spelling
Oct 17, 2025
6579a65f Made changes based on ruff-lint-increased feedback
Oct 17, 2025
d6c47bd4 Ruff formatting stuff
Oct 17, 2025
897cb022 Improved code readability
Oct 17, 2025
4cde2d5c Changed typehints to literal for axis and direction
Oct 17, 2025
024c74f6 More docstrings and comments. Removed json dump to openflexure folder.
Oct 17, 2025
f501e774 More refactoring
Oct 17, 2025
e95f31d8 Resolved data tracking error.
Oct 17, 2025
875bf1a6 Fixed ruff format errors
Oct 17, 2025
8dad3463 Made changes to docstrings and a few minor code changes.
Oct 17, 2025
3a0961e9 Clearer dictionary keys
Oct 17, 2025
1afaa534 Removed cv2 resize
Oct 17, 2025
ab9a3241 Typehint added and import removed.
Oct 17, 2025
1e7f62f8 2 unit tests added. Added a dummy matrix to mock_csm and changed position in...
Oct 17, 2025
6bed02ec Removed assert statement and replaced with custom exception
Oct 17, 2025
e3a17240 Typehint given to data
Oct 17, 2025
773f19ee Added unit test for parasitic error
Oct 17, 2025
094cb94d Ruff formatting
Oct 17, 2025
61167888 Fixed pydoctor errors
Oct 17, 2025
e5b0c7f0 Created function to collate data with unit test for it
Oct 17, 2025
1e7ad7bf Fixed ruff errors
Oct 17, 2025
3f29e6cc Changed variable name, fixed parasitic error
Oct 17, 2025
19b2afe7 Logging fixes
Oct 17, 2025
8a0836f3 Fix some annotations, arguments, and docstring formatting
Oct 17, 2025
9fe6ad8e Reduce argument numbers with data class and constants
Oct 17, 2025
23c4ac6c Adjust data types and remove need to reset tracker
Oct 17, 2025
ee76a468 Move actions to top of ROM thing
Oct 17, 2025
f1730ff2 Tidy up ROM action and add a lock
Oct 17, 2025
8a1acbea Refactor as class methods, renaming methods based on intended purpose.
Oct 17, 2025
50d6298c Start updating ROM tests for new structure
Oct 17, 2025
664c7de5 Add more ROM tests
Oct 17, 2025
3d49cbf9 Adding even more ROM tests
Oct 17, 2025
95f5bbb1 Ensure ROM z-predict returns an integer and add more tests.
Oct 17, 2025
30217a4c Add tests for initial moves at start of ROM test
Oct 17, 2025
a935105e Update docstrings in response to review.
Oct 17, 2025
b314ced4 Final Range of motion tests
Oct 17, 2025
0be62d77 Scan viewer component
Oct 17, 2025
39a04df5 Objects for scan locations allowing more sophisitcated tracking.
Oct 19, 2025
f781e6b6 Image intermediate locations between sample and background
Oct 19, 2025
dbb0a4ac Fix issues found by MyPy
Oct 19, 2025
635375a0 Fix assumption that CSM was a numpy array not a list
Oct 20, 2025
ff606ff1 Apply spelling corrections and variable renaming from code review of branch improve-scan-planning
Oct 20, 2025
e51fbb4f Merge branch 'improve-scan-planning' into 'v3'
Oct 20, 2025
72c35c30 Adjust CSM Thing to allow calculation of stage coords from img coords and use this in stage measure
Oct 20, 2025
7f657ae8 No error on parasitic motion after small step checking for stage movement, use background detect
Oct 20, 2025
16687b52 Format time difference in webapp
Oct 20, 2025
bffd7f9d Improve type consistency and error message
Oct 21, 2025
04d31620 Send scan duration as a number (or null) from backend. Format in UI
Oct 21, 2025
d5701fab Fix sync button to emit click on click event.
Oct 21, 2025
18ad404a Set colour correction to interpolate value
Oct 21, 2025
b8eb1907 Modify range of motion _move_back_until_motion_detected to move in SMALL_STEP steps
Oct 21, 2025
d913db92 CCM for HQ cam also
Oct 21, 2025
ab0e00eb Fix ruff
Oct 21, 2025
5c2d61ba Refactor brightness, contrast, and saturation filters into Vue props.
Oct 21, 2025
4c1dcdb8 Tidy up HTML spacing and styling
Oct 21, 2025
073ef2ca Merge branch 'camera-defaults-patch' into 'v3'
Oct 21, 2025
be5087b9 Merge branch 'colourful-dragon' into 'v3'
Oct 21, 2025
203fb53c Merge branch 'fix-sync-button' into 'v3'
Oct 21, 2025
82f43525 Release lock at end of ROM test
Oct 22, 2025
13b190a8 Merge branch 'modified-times' into 'v3'
Oct 23, 2025
b1413ca6 Camera metadata with basic data
Oct 23, 2025
e0ce4060 Fix property name and call
Oct 23, 2025
f8ee71b9 Make thing state mutable within the method
Oct 23, 2025
057376a7 Capture metadata with more info, including default time tags
Oct 23, 2025
c2d8160f Smart Scan metadata containing scan name if scan is running
Oct 23, 2025
4f0d4536 Apply suggestions from code review of branch camera-metadata
Oct 23, 2025
9db2cb95 Apply suggestions from code review of branch camera-metadata
Oct 23, 2025
24be9934 Apply suggestions from code review of branch camera-metadata
Oct 23, 2025
60204042 Add timezone to capture metadata
Oct 23, 2025

192 additional commits have been omitted to prevent performance issues.