v3.0.0-alpha1 to v3.0.0-alpha2 · OpenFlexure / openflexure-microscope-server · GitLab

Commits on Source 360

cf801205 Remove numerical input spinners for x,y,z settings in Firefox
Jun 10, 2025
3f0564f2 Turning on more lint checkers, warning for cameras that ignore resolution setting
Jun 10, 2025
2050c2dc Add return checker, needed 4 fixes
Jun 10, 2025
1c54d252 Add ruff checking for unnecessary comprehensions
Jun 10, 2025
04832892 Chnge docstring tester from Doc to D as Doc has no effect
Jun 10, 2025
fe26a299 Correct version name in change beta1 -> alpha1
Jun 11, 2025
86dad84a Merge branch 'correct-alpha-version-changelog' into 'v3'
Jun 11, 2025
3019e13c Add commented out code check to linters
Jun 11, 2025
37bb9635 Apply 2 suggestion(s) to 2 file(s)
Jun 12, 2025
c43b7cb8 Merge branch 'more-checkers' into 'v3'
Jun 12, 2025
67e8b196 Merge branch 'remove-nav-spinners-firefox' into 'v3'
Jun 16, 2025
3e164102 A stack that tests whether the sharpest image is towards the middle
Jun 17, 2025
712f5244 Looping autofocus on failed smart stack
Jun 17, 2025
0671f2d1 Backlash correction as global, more comments
Jun 17, 2025
cdd603d7 Capture the full stack requested
Jun 17, 2025
dbb65d55 Use scan autofocus dz
Jun 17, 2025
f363ec0e Docstring for test_stack
Jun 17, 2025
e8c4103b Remove unneeded logging
Jun 17, 2025
1d4bb736 Images to test control in GUI
Jun 17, 2025
f7545c6d Update issue templates
Jun 17, 2025
dd24a386 Apply suggestions from code review of branch update-issue-templates
Jun 17, 2025
b01032be Merge branch 'update-issue-templates' into 'v3'
Jun 17, 2025
c0677858 Scan planner finds lowest neighbour, not most recent
Jun 18, 2025
6acfbaef Split up z stack function
Jun 18, 2025
00321d76 Update docstring for nearby focus site
Jun 19, 2025
6cf2f4d8 Typehints and docstrings in z_stack
Jun 19, 2025
cdf23bc4 Add a timeout when shutting down the server.
Jun 19, 2025
ce33b94a Capture as a Raw dependency to use methods that aren't actions
Jun 20, 2025
006d3b2a Apply suggestions from code review of branch fast-stack
Jun 20, 2025
d1ed7ec7 Apply suggestions from code review of branch fast-stack
Jun 20, 2025
a001da0b Restore closest_focus_site function
Jun 20, 2025
f6cc7403 Update test_smart_spiral_first_few_pos() as smart stack chooses a different z_estimate
Jun 20, 2025
b05e3bee added openflexure/ to .gitignore
Jun 20, 2025
9dac0805 Fixed merge conflict
Jun 20, 2025
cc506b87 Merge branch 'simulation-axes' into 'v3'
Jun 20, 2025
4c720985 Merge branch 'shutdown-timeout' into 'v3'
Jun 20, 2025
c70b487a Automatically create HTML coverage report each time PyTest runs
Jun 23, 2025
603b9c7d Functional z stack Thing
Jun 23, 2025
a1784941 Ruff formatting and removing all capturing from smart_scan
Jun 23, 2025
46458ca8 Create a stack folder and copy the middle image to image_dir
Jun 23, 2025
d8878e40 Stacking in autofocus with temp capture Thing
Jun 23, 2025
ab33de7c Capture a jpeg to disk
Jun 23, 2025
26163dc9 Added a new way to capture full res JPEGs, need to do a comparison of results
Jun 23, 2025
132efa80 Options for capture method, default downsampling of correlations
Jun 23, 2025
9d138523 Rename jpeg_array to highres_array
Jun 23, 2025
8bc0573a Capture_array can now use "full" stream
Jun 23, 2025
de7ffb9d Stream_name and capture_method args updated
Jun 23, 2025
a9fdd0ea Wait params in captures, multiple attempts to capture
Jun 23, 2025
17f3bbe6 Low res stream during scanning for instant high res captures
Jun 23, 2025
f5c1ff26 Ruff formating
Jun 23, 2025
9f2a131f Swap stream for scan, target_resolution as arg
Jun 23, 2025
dbed1c69 Default resize in stitching for scan tab stitching
Jun 23, 2025
744ec28f Get images as a PIL image from camera, use resizing and saving as settling time in stack
Jun 23, 2025
0d32983b Only undershoot z stack if image count > 1, settle before first capture
Jun 23, 2025
d39bcbaf Moved streaming changing to inner loop
Jun 23, 2025
52b58241 Added copy_sharpest_image to autofocus
Jun 23, 2025
478c3629 Scan_resize from global vars, added to scan_data
Jun 23, 2025
968bd339 SETTLING_TIME global in stacking
Jun 23, 2025
2d946637 Added buffer_count as an argument of streaming
Jun 23, 2025
8c8c6568 Updated docstring for start_streaming
Jun 23, 2025
985d20e0 Capture resolution as a Thing property
Jun 23, 2025
2f9e37a0 More descriptive timing variable names
Jun 23, 2025
7052917f capture_image in stub raises NotImplemented
Jun 23, 2025
4271c280 More descriptive variable names in smart_scan, use resize in stitching with no default
Jun 23, 2025
35e1d6cd Remove unused actions in capture
Jun 23, 2025
628fd145 Cleaned up settling time maths to only calculate once
Jun 23, 2025
b5606984 Consolidate the BaseCamera, CameraStub, and CameraProtocol, move StreamingPiCamera2 to this repo
Jun 23, 2025
4368dc3d Consolidate functionality into BaseCamera from Capture Thing and StreamingPicamera2
Jun 23, 2025
0e3f4305 Tidy post refactor of cameras
Jun 23, 2025
7a754754 Apply suggestions from code review of branch fast-stack
Jun 23, 2025
333ea1b6 More input validation and comments
Jun 23, 2025
8fea35a6 Remove duplicate docstring
Jun 23, 2025
9f19434f Merge branch 'html-coverge-report' into 'v3'
Jun 23, 2025
72faba02 Fix issues found by linter in PiCamera Code
Jun 23, 2025
dd63d746 Removing mjpeg bitrate setter from UI and Python as it wasn't implemented...
Jun 23, 2025
7cff0f8f StackInfo dataclass
Jun 23, 2025
c659ba8f Minor tidying to Picamera Thing
Jun 23, 2025
ee128ad9 Rename to StackParams, move undershoots into Params
Jun 23, 2025
2a0de912 computed_field pydantic decorators
Jun 23, 2025
8ba40832 Neighbour cutoff moved from autofocus.py to scan_planners.py
Jun 23, 2025
62a07622 If not provided, find resize from image size when stitching
Jun 23, 2025
c6682f53 Correct spelling of Sangaboard
Jun 23, 2025
7435d15b Merge branch 'Bug-template-typo' into 'v3'
Jun 23, 2025
afea1e36 Create function for flattening and rounding array and converting to a list
Jun 23, 2025
cdae9001 Modify comment for clarity in the function that copies the lens shading algorithm
Jun 23, 2025
febb0d26 Clarify white balance code.
Jun 23, 2025
7c3a9ad0 Copy sharpest image from stack, not the most average sharpness!
Jun 23, 2025
11c8f47e Rename central image to sharpest
Jun 23, 2025
be079666 Remove the overwriting of internal globals, requires removing future annoations
Jun 24, 2025
16dfe907 Merge branch 'do-not-overwrite-globals' into 'v3'
Jun 24, 2025
a43a8221 Improve docs for hardware specific tests
Jun 24, 2025
83832bf3 Update import name of recalibrate_utils
Jun 24, 2025
9966cb0f Longer wait in exposure time test with fewer loops and lower exposure time
Jun 24, 2025
4e78f3d1 Fix exposure time adjusting when setting the same value and add test
Jun 24, 2025
8a4ad49c Apply suggestions from code review of branch jpeg-capture-in-stacking
Jun 25, 2025
59d15fb1 Add further comment to picamera tests
Jun 25, 2025
2d49bf20 Remove duplicate exposure property from picamera thing
Jun 25, 2025
0933ece6 Apply suggestions from code review of branch jpeg-capture-in-stacking
Jun 25, 2025
ce5b5b78 Add typehints and docstrings as suggested in review
Jun 25, 2025
0751457e Remove rednundant if __main__ from hardware tests
Jun 25, 2025

260 additional commits have been omitted to prevent performance issues.