Commit 980e6439 authored by Joel Collins's avatar Joel Collins
Browse files

Improved scan metadata

parent 4602b1da

openflexure_microscope/plugins/default/scan/plugin.py

+13 −4
Original line number Diff line number Diff line
@@ -79,12 +79,13 @@ class ScanPlugin(MicroscopePlugin): 
            bayer=bayer)



        # Affix metadata

        if 'stack' not in tags:

            tags.append('stack')

        if 'scan' not in tags:

            tags.append('scan')



        metadata.update({

            'Position': self.microscope.state['stage']['position'],

            'Stack ID': scan_id

            'position': self.microscope.state['stage']['position'],

            'scan_id': scan_id,

            'basename': basename,

        })



        output.put_metadata(metadata)
@@ -113,6 +114,10 @@ class ScanPlugin(MicroscopePlugin): 
        # Store initial position

        initial_position = self.microscope.stage.position



        # Add scan metadata

        if not 'time' in metadata:

            metadata['time'] = generate_basename()



        # Check if autofocus is enabled

        if autofocus_dz and hasattr(self.microscope.plugin, 'default_autofocus'):

            autofocus_enabled = True
@@ -199,6 +204,10 @@ class ScanPlugin(MicroscopePlugin): 
        if not scan_id:

            scan_id = uuid.uuid4().hex



        # Add scan metadata

        if not 'time' in metadata:

            metadata['time'] = generate_basename()



        # Store initial position

        initial_position = self.microscope.stage.position