polarize_vcf in data2haplohh
Hello,
I was trying to polarize my .vcf file using the function "data2haplohh" according to the info field "AA=" However, it never worked "Error: No marker could be polarized. Conversion stopped."
I was using the data.table library (and specifying it on vcf_reader = "data.table") as the manual says you can use either that library or vcfR. However, When I changed to vcfR Library everything worked using exactly the same file and commands (except vcf_reader = "vcfR"). Maybe I did something wrong, but maybe data.table is not that good to polarize .vcf data based on the info field.
You can try with my .vcf in case you want to double-check 6_2.ann.vcf.gz
Thank you!
Kind regards, Diego.