Commit bff5af3c authored by Sol Lee's avatar Sol Lee
Browse files

initial commit

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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# Pelican
output/
MIT License
Copyright (c) 2016 Cheng-Jen Lee.
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and
associated documentation files (the "Software"), to deal in the Software without restriction,
including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense,
and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so,
subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial
portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT
NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
PY?=python3
PELICAN?=pelican
PELICANOPTS=
BASEDIR=$(CURDIR)
INPUTDIR=$(BASEDIR)/content
OUTPUTDIR=$(BASEDIR)/output
CONFFILE=$(BASEDIR)/pelicanconf.py
PUBLISHCONF=$(BASEDIR)/publishconf.py
FTP_HOST=localhost
FTP_USER=anonymous
FTP_TARGET_DIR=/
SSH_HOST=localhost
SSH_PORT=22
SSH_USER=root
SSH_TARGET_DIR=/var/www
S3_BUCKET=my_s3_bucket
CLOUDFILES_USERNAME=my_rackspace_username
CLOUDFILES_API_KEY=my_rackspace_api_key
CLOUDFILES_CONTAINER=my_cloudfiles_container
DROPBOX_DIR=~/Dropbox/Public/
GITHUB_PAGES_BRANCH=gh-pages
DEBUG ?= 0
ifeq ($(DEBUG), 1)
PELICANOPTS += -D
endif
RELATIVE ?= 0
ifeq ($(RELATIVE), 1)
PELICANOPTS += --relative-urls
endif
help:
@echo 'Makefile for a pelican Web site '
@echo ' '
@echo 'Usage: '
@echo ' make html (re)generate the web site '
@echo ' make clean remove the generated files '
@echo ' make regenerate regenerate files upon modification '
@echo ' make publish generate using production settings '
@echo ' make serve [PORT=8000] serve site at http://localhost:8000'
@echo ' make serve-global [SERVER=0.0.0.0] serve (as root) to $(SERVER):80 '
@echo ' make devserver [PORT=8000] start/restart develop_server.sh '
@echo ' make stopserver stop local server '
@echo ' make ssh_upload upload the web site via SSH '
@echo ' make rsync_upload upload the web site via rsync+ssh '
@echo ' make dropbox_upload upload the web site via Dropbox '
@echo ' make ftp_upload upload the web site via FTP '
@echo ' make s3_upload upload the web site via S3 '
@echo ' make cf_upload upload the web site via Cloud Files'
@echo ' make github upload the web site via gh-pages '
@echo ' '
@echo 'Set the DEBUG variable to 1 to enable debugging, e.g. make DEBUG=1 html '
@echo 'Set the RELATIVE variable to 1 to enable relative urls '
@echo ' '
html:
$(PELICAN) $(INPUTDIR) -o $(OUTPUTDIR) -s $(CONFFILE) $(PELICANOPTS)
clean:
[ ! -d $(OUTPUTDIR) ] || rm -rf $(OUTPUTDIR)
regenerate:
$(PELICAN) -r $(INPUTDIR) -o $(OUTPUTDIR) -s $(CONFFILE) $(PELICANOPTS)
serve:
ifdef PORT
cd $(OUTPUTDIR) && $(PY) -m pelican.server $(PORT)
else
cd $(OUTPUTDIR) && $(PY) -m pelican.server
endif
serve-global:
ifdef SERVER
cd $(OUTPUTDIR) && $(PY) -m pelican.server 80 $(SERVER)
else
cd $(OUTPUTDIR) && $(PY) -m pelican.server 80 0.0.0.0
endif
devserver:
ifdef PORT
$(BASEDIR)/develop_server.sh restart $(PORT)
else
$(BASEDIR)/develop_server.sh restart
endif
stopserver:
$(BASEDIR)/develop_server.sh stop
@echo 'Stopped Pelican and SimpleHTTPServer processes running in background.'
publish:
$(PELICAN) $(INPUTDIR) -o $(OUTPUTDIR) -s $(PUBLISHCONF) $(PELICANOPTS)
ssh_upload: publish
scp -P $(SSH_PORT) -r $(OUTPUTDIR)/* $(SSH_USER)@$(SSH_HOST):$(SSH_TARGET_DIR)
rsync_upload: publish
rsync -e "ssh -p $(SSH_PORT)" -P -rvzc --delete $(OUTPUTDIR)/ $(SSH_USER)@$(SSH_HOST):$(SSH_TARGET_DIR) --cvs-exclude
dropbox_upload: publish
cp -r $(OUTPUTDIR)/* $(DROPBOX_DIR)
ftp_upload: publish
lftp ftp://$(FTP_USER)@$(FTP_HOST) -e "mirror -R $(OUTPUTDIR) $(FTP_TARGET_DIR) ; quit"
s3_upload: publish
s3cmd sync $(OUTPUTDIR)/ s3://$(S3_BUCKET) --acl-public --delete-removed --guess-mime-type
cf_upload: publish
cd $(OUTPUTDIR) && swift -v -A https://auth.api.rackspacecloud.com/v1.0 -U $(CLOUDFILES_USERNAME) -K $(CLOUDFILES_API_KEY) upload -c $(CLOUDFILES_CONTAINER) .
github: publish
ghp-import -m "Generate Pelican site" -b $(GITHUB_PAGES_BRANCH) $(OUTPUTDIR)
git push origin $(GITHUB_PAGES_BRANCH)
.PHONY: html help clean regenerate serve serve-global devserver publish ssh_upload rsync_upload dropbox_upload ftp_upload s3_upload cf_upload github
# Website for 2016 Workshop on Collaborative Data Projects
author: [Cheng-Jen Lee](http://about.me/Sollee)
This site is built with a Python Static Site Generator [Pelican](http://getpelican.com).
# Dependencies
* Only tested on Ubuntu 14.04 and Python 3.4 (but it should work in Python 2.7 too).
```
sudo apt-get install build-essential python3-dev
```
* Python dependencies
```
pip3 install -r requirements.txt
```
# Site Generation
```
make publish
```
You can also reference Pelican's [documentation](http://docs.getpelican.com/en/stable/publish.html).
Title: 關於
Slug: about
Lang: zh-tw
Date: 2016-11-15
#### 日期:2016/12/8(四)13:30-17:00
Title: About
Slug: about
Lang: en
Date: 2016-11-15
#### Date: Thursday December 8, 2016 13:30-17:00
Title: Assessing Value of Biomedical Digital Repositories
Slug: assessing-value-of-biomedical-digital-repositories
Lang: en
Date: 2016-11-11
Category: Programme
**Chun-Nan Hsu**
School of Medicine, UC San Diego
**Abstract**
Digital repositories bring direct impacts and influence to the research community and society but at the moment it is challenging to objectively measure their value. We distinguished the difference between impacts and influence and discussed measures and mentions as the basis of a quality metric of a digital repository. It is challenging to define a single perfect metric that covers all quality aspects. We argue that these challenges may potentially be overcome through the introduction of standard resource identification and data citation practices. Full implementation of these standards will depend on cooperation from all stakeholders --- digital repositories, authors, publishers, and funding agencies, for which we have been gaining support with endorsements and resource investments.
Location
########
:slug: location
:lang: zh-tw
:date: 2016-11-11
**地點:中央研究院 資訊科學研究所 新館 106 演講廳**
**地址:台北市南港區研究院路二段 128 號**
.. raw:: html
<link rel="stylesheet" href="https://unpkg.com/leaflet@1.0.1/dist/leaflet.css" />
<script src="https://unpkg.com/leaflet@1.0.1/dist/leaflet.js"></script>
<div id="mapid" style="height: 300px;"></div>
<script>
var map = L.map('mapid').setView([25.04114599194039, 121.6146183013916], 18);
L.tileLayer('https://api.tiles.mapbox.com/v4/{id}/{z}/{x}/{y}.png?access_token=pk.eyJ1IjoibWFwYm94IiwiYSI6ImNpandmbXliNDBjZWd2M2x6bDk3c2ZtOTkifQ._QA7i5Mpkd_m30IGElHziw', {
maxZoom: 18,
attribution: 'Map data &copy; <a href="http://openstreetmap.org">OpenStreetMap</a> contributors, ' +
'<a href="http://creativecommons.org/licenses/by-sa/2.0/">CC-BY-SA</a>, ' +
'Imagery © <a href="http://mapbox.com">Mapbox</a>',
id: 'mapbox.streets'
}).addTo(map);
L.marker([25.04114599194039, 121.6146183013916]).addTo(map)
.bindPopup('中央研究院 資訊科學研究所')
.openPopup();
</script>
**中央研究院院區地圖**
.. image:: /images/sinicamap_e.gif
:alt: 中央研究院院區地圖
資訊所為圖中「紫色 32 號」。
交通 / 停車資訊
===============
公車
----
抵達中研院的公車有:205、212、212直、212區、270、270區、276、306、620、645、645副、679、藍25、小1、小5、小5區、小12。
下車站牌為「中研院」。
下車後建議步行捷徑:穿過中研院郵局或萊爾富便利商店進入院區,然後請往左邊走到底,右轉進入椰林道(數理大道)直走即可到達資訊所。
捷運
----
可以搭捷運至「南港站」或「南港展覽館站」出站,轉搭公車或計程車至中研院。
轉搭公車:
「南港站」出口 2 右邊的公車站「捷運南港站」,換乘公車212直、212區、270、270區、藍25,至「中研院」站下車;
「南港展覽館站」出口 5 對面公車站「南港展覽館」,換乘公車205、212、276、306、620、645、645副、679、小1、小5、小5區、小12,至「中研院」站下車。
下車後建議步行捷徑請見「公車」的內容。
轉搭計程車的相關資訊請見「計程車」的內容。
計程車
------
請司機在中研院大門警衛室換證後駛入院區,接著請參考下列地圖請司機直接開到學術活動中心門口下車。
計程車於 30 分鐘內駛出中研院免收費。
臺鐵/高鐵
---------
最近的臺鐵/高鐵車站為南港車站。
出站後需轉乘計程車或公車前至中研院。
計程車資訊請見「計程車」的內容。
南港車站的前後與後站均有公車抵達中研院:
前站公車站牌有二:一是位於南港路上的「南港行政中心」,此站公車路線多,推薦由此站搭乘較方便;另一是位於市民大道上的「南港車站」,僅小12駛往中研院;
後站公車站牌是位於忠孝東路上的「捷運南港站」。
其餘公車資訊請見「公車」的內容。
機車 / 汽車停車場
-----------------
中研院大門處旁有機車停車棚,此外,院區外圍的週邊道路也規劃有機車格可停放機車。
汽車入口為中研院大門,在上班日駛入院區必須於大門警衛室換證。您的汽車需停放在外賓專用停車場,位置在人文社會科學館(人社館)地下二樓 B2。
停車超過 30 分鐘將收取收費:每小時 20 元,第 1 小時未滿 30 分鐘者,免收費用;自第 2 小時起,每小時未滿 30 分鐘,以半小時 10 元計費,超過 30 分鐘後,以1小時 20 元計費。
從人社館步行至資訊所約五分鐘。
圖中右上角紅色箭頭的 1 號,即為車輛駛入院區的中研院大門。
外賓停車場所在的人文社會科學館為圖中「綠色 24 號」。
資訊所為圖中「紫色 32 號」。
Location
########
:slug: location
:lang: en
:date: 2016-11-11
**Venue: Academia Sinica (AS), Institute of Information Science (IIS), Auditorium 106 at new IIS Building**
**Address: No. 128, Section 2, Academia Road, Nangang, Taipei, Taiwan**
.. raw:: html
<link rel="stylesheet" href="https://unpkg.com/leaflet@1.0.1/dist/leaflet.css" />
<script src="https://unpkg.com/leaflet@1.0.1/dist/leaflet.js"></script>
<div id="mapid" style="height: 300px;"></div>
<script>
var map = L.map('mapid').setView([25.04114599194039, 121.6146183013916], 18);
L.tileLayer('https://api.tiles.mapbox.com/v4/{id}/{z}/{x}/{y}.png?access_token=pk.eyJ1IjoibWFwYm94IiwiYSI6ImNpandmbXliNDBjZWd2M2x6bDk3c2ZtOTkifQ._QA7i5Mpkd_m30IGElHziw', {
maxZoom: 18,
attribution: 'Map data &copy; <a href="http://openstreetmap.org">OpenStreetMap</a> contributors, ' +
'<a href="http://creativecommons.org/licenses/by-sa/2.0/">CC-BY-SA</a>, ' +
'Imagery © <a href="http://mapbox.com">Mapbox</a>',
id: 'mapbox.streets'
}).addTo(map);
L.marker([25.04114599194039, 121.6146183013916]).addTo(map)
.bindPopup('IIS, Academia Sinica')
.openPopup();
</script>
**AS Campus Map**
.. image:: /images/sinicamap_e.gif
:alt: AS Campus Map
The IIS Building is located at "Purple No. 32" on the map.
Transportation / Parking Information
====================================
By BUS
------
Taipei e-bus System website: http://www.5284.com.tw/Dybus.aspx?Lang=En
You can take bus route 205, 212, 212Express, 212Shuttle, 270, 270Shuttle, 276, 306, 620, 645, 645Sub, 679, BL25, S1, S5 or S12 to AS.
Please get off at "Academica Sinica" stop, then walk through AS campus to the new IIS Building.
By MRT (Mass Rapid Transit)
---------------------------
Taipei MRT website: http://english.metro.taipei/
There are two MRT stations close to AS: "Nangang Station (BL22)" and "Taipei Nangang Exhibition Center Station (BL23/BR24)". From these two stations you can take taxi or bus to AS.
From Exit 5 of MRT "Nangang Exhibition Center Staion" you can take bus route 205, 212, 276, 306, 620, 645, 645Sub, 679, S1, or S12 to "Academia Sinica" stop, then walk to the new IIS Building.
From Exit 2 of MRT "Nangang Station" you can take bus route 212Shuttle, 212Express, 270, or BL25 and get off at "Academia Sinica" stop, then walk to the new IIS Building.
If you take taxi, it will cost around NT$100 from either of the two MRT stations.
By Taxi
-------
Taxi can go into AS campus through main entrance and park in front of the IIS Building.
Parking is free if the car leaves AS campus within 30 minutes.
Most Taiwan taxi accept cash only.
By Train
--------
Taiwan Railways Administration (TRA) website: http://www.railway.gov.tw/en/
Taiwan High Speed Rail (HSR) website: http://www.thsrc.com.tw/index_en.html
You can take TRA or HSR train to Nankang train station, then take:
bus route 205, 212, 276, 306, 306Shuttle, 679, S5, or S5Shuttle at front door exit (in Nangang Road),
or bus route 212Shuttle, 212Express, 270, 270Shuttle, or BL25 at back door exit (in Zhongxiao East Road).
Please get off at "Academia Sinica" stop, then walk to the new IIS Building.
Parking Information
-------------------
There is a small parking lot for motorcycle/scooter at main entrance. Besides there are also parking spaces for motorcycle/scooter around AS.
Cars can directly go into AS campus with visitor registration at the main entrance.
Visitor parking lot is located on B2 of the Humanities and Social Sciences Building (HSSB).
Parking is free, if the car leaves AS campus within 30 minutes. Rules of the parking fee are as follows:
NT$ 20 for the first hour,
NT$ 10 for each additional half an hour after the first hour,
parking less than half an hour will be counted as half an hour.
It will take about 5 minutes to walk from HSSB to the new IIS Building.
Red arrow No.1 on upper right corner of the map is the main entrance through which cars can go into AS campus.
Visitor parking lot (HSSB) is located at "Green No. 24" on the campus map.
The new IIS Building is located at "Purple No. 32" on the campus map.
From Songshan Airport to AS
---------------------------
You can take the MRT Line 1 (Wenhu Line), transfer at Zhongxiao Fuxing station (BR10), and then take the MRT Line 5 (Bannan Line) to the aforementioned MRT stations (either Taipei Nangang Exhibition Center or Nangang would suffice), then take taxi or bus to AS.
Besides, taking a taxi directly from the airport to the venue is the most convenient way. It will cost you around NT$ 200~300.
More details please refer to "By MRT (Mass Rapid Transit)", "By Taxi", and "AS Campus Map".
From Taoyuan Airport to AS
---------------------------
Airport Bus "Kuokuang 1843 line" can bring you to MRT Nangang Exhibition Center Station while "Kuokuang 1819 line" goes to Taipei Main Station. Both line destinations are in downtown Taipei. You can then easily reach the venue by taxi, bus, or MRT.
Taking taxi from Taoyuan Airport to AS campus costs NT$1200~1500. The taxi can go into AS campus through main entrance and park in front of the IIS.
More details please refer to "By MRT (Mass Rapid Transit)", "By Taxi" and "AS Campus Map".
議程
####
:slug: programme
:lang: zh-tw
:date: 2016-11-11
:category: Programme
.. list-table::
:widths: 8 10 18 19
:header-rows: 1
:class: table table-striped table-hover
* - **時間**
- **議程**
- **主題**
- **講者**
* - 13:30
- 報 到
-
-
* - 13:50
- 開場致詞
-
-
* - 14:00-15:00
-
- (待公布)
- 林德恩(台灣特有生物研究保育中心)
* -
-
- A General Framework/Platform for Annotating/Archiving Crowdsourced Multimedia/Knowledge of Biodiversity/Ecology/Environment: Phytophilo Community as An Example
- 王豫煌(中央研究院 生物多樣性研究中心)
* -
-
- LASS: A Participatory Ecosystem for PM2.5 monitoring
- 陳伶志(中央研究院 資訊科學研究所)
* -
-
- Orphan Works and Collective Memories: On Setting Up The Sunflower Movement Archive
- 莊庭瑞(中央研究院 資訊科學研究所)
* - 15:00-15:30
- 休 息
-
-
* - 15:30-16:30
-
- `Sharing of Survey Data in Taiwan </sharing-of-survey-data-in-taiwan.html>`_
- 于若蓉(中央研究院 人文社會科學研究中心 調查研究專題中心)
* -
-
- Licensing Policies for Collaborative Data Production and Reuse
- 梅娜妮.督儂.德侯內(法國國家科學研究中心)
* -
-
- `Assessing Value of Biomedical Digital Repositories </assessing-value-of-biomedical-digital-repositories.html>`_
- 許均南(加州大學聖地牙哥分校醫學院)
* -
-
- (待公布)
- 麥克.領思維爾(獨立學者)
* - 16:30-17:00
- 討 論
-
-
Programme
#########
:slug: programme
:lang: en
:date: 2016-11-11
:category: Programme
.. list-table::
:widths: 8 10 20 17
:header-rows: 1
:class: table table-striped table-hover
* - **Time**
- **Sessions**
- **Titles**
- **Speakers**
* - 13:30
- Registration
-
-
* - 13:50
- Opening Remark
-
-
* - 14:00-15:00
-
- (to be announced)
- **Te-En Lin**, Taiwan Endemic Species Research Institute
* -
-
- A General Framework/Platform for Annotating/Archiving Crowdsourced Multimedia/Knowledge of Biodiversity/Ecology/Environment: Phytophilo Community as An Example
- **Yu-Huang Wang**, Research Center for Biodiversity, Academia Sinica
* -
-
- LASS: A Participatory Ecosystem for PM2.5 monitoring
- **Ling-Jyh Chen**, Inst. of Information Science, Academia Sinica
* -
-
- Orphan Works and Collective Memories: On Setting Up The Sunflower Movement Archive
- **Tyng-Ruey Chuang**, Inst. of Information Science, Academia Sinica
* - 15:00-15:30
- Break
-
-
* - 15:30-16:30
-
- `Sharing of Survey Data in Taiwan </sharing-of-survey-data-in-taiwan.html>`_
- **Ruoh-Rong Yu**, Center for Humanities and Social Sciences, Academia Sinica
* -
-
- Licensing Policies for Collaborative Data Production and Reuse
- **Melanie Dulong de Rosnay**, CNRS
* -
-
- `Assessing Value of Biomedical Digital Repositories </assessing-value-of-biomedical-digital-repositories.html>`_
- **Chun-Nan Hsu**, School of Medicine, UC San Diego
* -
-
- (to be announced)
- **Mike Linksvayer**, independent scholar
* - 16:30-17:00
- Discussion
-
-
Title: Sharing of Survey Data in Taiwan
Slug: sharing-of-survey-data-in-taiwan
Lang: en
Date: 2016-11-11
Category: Programme
**Ruoh-Rong Yu**
Research Fellow and Executive Director
Center for Survey Research, Research Center for Humanities and Social Sciences, Academia Sinica, Taiwan
**Abstract**
Founded in November 1994, the Survey Research Data Archive (SRDA) curates the largest collection of digital survey data on social sciences in Taiwan. It engages in the acquisition, preservation, and dissemination of high quality survey data. The SRDA acquires data mostly from academic and governmental agencies. Before release, each dataset goes through a standardized processing procedure to ensure integrity and quality. To get access to the datasets released by the SRDA, a membership is required. The SRDA members include researchers, college teachers, and graduate students, within and outside of Taiwan. Similar to Interuniversity Consortium for Political and Social Research (ICPSR), UK Data Service, Social Science Japan Data Archive (SSJDA), Korea Social Science Data Archive (KOSSDA) and other established survey data centers, SRDA is important in collecting, preserving, and providing access to census and sampling survey data.
Title: 講者
Slug: speaker
Lang: zh-tw
Date: 2016-11-11
#### 林德恩
台灣特有生物研究保育中心
***
#### 王豫煌
中央研究院 生物多樣性研究中心
***
#### 陳伶志
中央研究院 資訊科學研究所
***
#### 莊庭瑞
中央研究院 資訊科學研究所
***
#### 于若蓉
中央研究院 人文社會科學研究中心 調查研究專題中心
研究員暨執行長
***
#### 梅娜妮.督儂.德侯內
法國國家科學研究中心
***