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Rewrite some code to avoid calling atan2 with both arguments being 0, as the result is undefined.

Micael Oliveirarequested to merge
fix_incorrect_atan2 into develop

Description

Rewrite some code to avoid calling atan2 with both arguments being 0, as the result is undefined.

News snippet

Fix problem when Born charges output.

Checklist

  • I have checked that my code follows the Octopus coding standards
  • I have added tests for all the new features added in this request.

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