Tests fail: usage: sleep seconds
Target check-short in Octopus-11.3 fails:
===> octopus-11.3 depends on file: /usr/local/bin/python3.8 - found
gmake[1]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3'
gmake -C build check
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/build'
gmake[2]: Nothing to be done for 'check'.
gmake[2]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/build'
gmake -C external_libs check
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs'
Making check in metis-5.1
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1'
Making check in include
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1/include'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1/include'
Making check in GKlib
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1/GKlib'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1/GKlib'
Making check in libmetis
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1/libmetis'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1/libmetis'
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1'
gmake[4]: Nothing to be done for 'check-am'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1'
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/metis-5.1'
Making check in qshep
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/qshep'
gmake[3]: Nothing to be done for 'check'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/qshep'
Making check in fortrancl
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/fortrancl'
gmake[3]: Nothing to be done for 'check'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/fortrancl'
Making check in bpdn
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/bpdn'
gmake[3]: Nothing to be done for 'check'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/bpdn'
Making check in yaml-0.1.4
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4'
Making check in include
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4/include'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4/include'
Making check in src
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4/src'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4/src'
Making check in .
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4'
gmake[4]: Nothing to be done for 'check-am'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4'
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/yaml-0.1.4'
Making check in dftd3
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/dftd3'
mkdir -p ../../share/dftd3/
for f in pars.dat; do \
if [ ! -e ../../share/dftd3/$f -o ../../share/dftd3/$f -ot ./$f ]; then \
cp ./$f ../../share/dftd3/$f; \
fi \
done
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/dftd3'
Making check in rapidxml
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/rapidxml'
gmake[3]: Nothing to be done for 'check'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs/rapidxml'
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs'
gmake[3]: Nothing to be done for 'check-am'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs'
gmake[2]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/external_libs'
gmake -C liboct_parser check
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/liboct_parser'
gmake[2]: Nothing to be done for 'check'.
gmake[2]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/liboct_parser'
gmake -C src check
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/src'
gmake[2]: Nothing to be done for 'check'.
gmake[2]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/src'
gmake -C share check
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share'
Making check in pseudopotentials
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials'
Making check in PSF
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/PSF'
for f in set_defaults Cd.psf C.psf C.psf.spacing D.psf H.psf Li.psf Na.psf N.psf O.psf O.psf.spacing Se.psf Se.psf.spacing Si.psf S.psf S.psf.spacing T.psf Ti.psf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/PSF'
Making check in HGH
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH'
Making check in lda
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH/lda'
for f in Ag.hgh Al.hgh Ar.hgh As.hgh At.hgh Au.hgh Ba.hgh Be.hgh B.hgh Bi.hgh Br.hgh Ca.hgh Cd.hgh C.hgh C.hgh.spacing Cl.hgh Co.hgh Cr.hgh Cs.hgh Cu.hgh D.hgh Fe.hgh F.hgh Ga.hgh Ge.hgh He.hgh He.hgh.spacing Hg.hgh H.hgh I.hgh In.hgh Ir.hgh K.hgh Kr.hgh Li.hgh Mg.hgh Mn.hgh Mo.hgh Na.hgh Nb.hgh Ne.hgh N.hgh N.hgh.spacing Ni.hgh O.hgh Os.hgh Pb.hgh Pd.hgh P.hgh Po.hgh Pt.hgh Rb.hgh Re.hgh Rh.hgh Rn.hgh Ru.hgh Sb.hgh Sc.hgh Se.hgh S.hgh Si.hgh Sn.hgh Sr.hgh T.hgh Ta.hgh Tc.hgh Te.hgh Ti.hgh Tl.hgh V.hgh W.hgh Xe.hgh Y.hgh Zn.hgh Zr.hgh; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH/lda'
Making check in lda_sc
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH/lda_sc'
for f in Ag_sc.hgh Au_sc.hgh Ba_sc.hgh Be_sc.hgh Ca_sc.hgh Cd_sc.hgh Ce_sc.hgh Co_sc.hgh Cr_sc.hgh Cs_sc.hgh Cu_sc.hgh Dy_sc.hgh Er_sc.hgh Eu_sc.hgh Fe_sc.hgh Ga_sc.hgh Gd_sc.hgh Hf_sc.hgh Hg_sc.hgh Ho_sc.hgh In_sc.hgh Ir_sc.hgh K_sc.hgh La_sc.hgh Li_sc.hgh Lu_sc.hgh Mg_sc.hgh Mn_sc.hgh Mo_sc.hgh Na_sc.hgh Nb_sc.hgh Nd_sc.hgh Ni_sc.hgh Os_sc.hgh Pd_sc.hgh Pm_sc.hgh Pr_sc.hgh Pt_sc.hgh Rb_sc.hgh Re_sc.hgh Rh_sc.hgh Ru_sc.hgh Sc_sc.hgh Sm_sc.hgh Sr_sc.hgh Ta_sc.hgh Tb_sc.hgh Tc_sc.hgh Ti_sc.hgh Tl_sc.hgh Tm_sc.hgh V_sc.hgh W_sc.hgh Yb_sc.hgh Y_sc.hgh Zn_sc.hgh Zr_sc.hgh; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH/lda_sc'
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH'
gmake[5]: Nothing to be done for 'check-am'.
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH'
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/HGH'
Making check in quantum-simulation.org
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org'
Making check in hscv
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv'
Making check in lda
gmake[6]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv/lda'
for f in Ac_HSCV_LDA-1.0.xml Ag_HSCV_LDA-1.0.xml Al_HSCV_LDA-1.0.xml Ar_HSCV_LDA-1.0.xml As_HSCV_LDA-1.0.xml At_HSCV_LDA-1.0.xml Au_HSCV_LDA-1.0.xml Ba_HSCV_LDA-1.0.xml B_HSCV_LDA-1.0.xml Bi_HSCV_LDA-1.0.xml Br_HSCV_LDA-1.0.xml Ca_HSCV_LDA-1.0.xml Cd_HSCV_LDA-1.0.xml Ce_HSCV_LDA-1.0.xml C_HSCV_LDA-1.0.xml Cl_HSCV_LDA-1.0.xml Co_HSCV_LDA-1.0.xml Cr_HSCV_LDA-1.0.xml Cs_HSCV_LDA-1.0.xml Cu_HSCV_LDA-1.0.xml D_HSCV_LDA-1.0.xml Dy_HSCV_LDA-1.0.xml Er_HSCV_LDA-1.0.xml Eu_HSCV_LDA-1.0.xml Fe_HSCV_LDA-1.0.xml F_HSCV_LDA-1.0.xml Fr_HSCV_LDA-1.0.xml Ga_HSCV_LDA-1.0.xml Gd_HSCV_LDA-1.0.xml Ge_HSCV_LDA-1.0.xml He_HSCV_LDA-1.0.xml Hf_HSCV_LDA-1.1.xml Hg_HSCV_LDA-1.0.xml H_HSCV_LDA-1.0.xml Ho_HSCV_LDA-1.0.xml I_HSCV_LDA-1.0.xml In_HSCV_LDA-1.0.xml Ir_HSCV_LDA-1.1.xml K_HSCV_LDA-1.0.xml Kr_HSCV_LDA-1.0.xml La_HSCV_LDA-1.0.xml Li_HSCV_LDA-1.0.xml Lu_HSCV_LDA-1.0.xml Mg_HSCV_LDA-1.0.xml Mn_HSCV_LDA-1.0.xml Mo_HSCV_LDA-1.0.xml Na_HSCV_LDA-1.0.xml Nb_HSCV_LDA-1.0.xml Nd_HSCV_LDA-1.0.xml Ne_HSCV_LDA-1.0.xml N_HSCV_LDA-1.0.xml Ni_HSCV_LDA-1.0.xml Np_HSCV_LDA-1.0.xml O_HSCV_LDA-1.0.xml Os_HSCV_LDA-1.0.xml Pa_HSCV_LDA-1.0.xml Pb_HSCV_LDA-1.0.xml Pd_HSCV_LDA-1.0.xml P_HSCV_LDA-1.0.xml Pm_HSCV_LDA-1.0.xml Po_HSCV_LDA-1.0.xml Pr_HSCV_LDA-1.0.xml Pt_HSCV_LDA-1.0.xml Pu_HSCV_LDA-1.0.xml Ra_HSCV_LDA-1.0.xml Rb_HSCV_LDA-1.0.xml Re_HSCV_LDA-1.0.xml Rh_HSCV_LDA-1.0.xml Rn_HSCV_LDA-1.0.xml Ru_HSCV_LDA-1.0.xml Sb_HSCV_LDA-1.0.xml Sc_HSCV_LDA-1.0.xml Se_HSCV_LDA-1.0.xml S_HSCV_LDA-1.0.xml Si_HSCV_LDA-1.0.xml Sm_HSCV_LDA-1.0.xml Sn_HSCV_LDA-1.0.xml Sr_HSCV_LDA-1.0.xml T_HSCV_LDA-1.0.xml Ta_HSCV_LDA-1.0.xml Tb_HSCV_LDA-1.0.xml Tc_HSCV_LDA-1.0.xml Te_HSCV_LDA-1.0.xml Th_HSCV_LDA-1.0.xml Ti_HSCV_LDA-1.0.xml Tl_HSCV_LDA-1.0.xml Tm_HSCV_LDA-1.0.xml U_HSCV_LDA-1.0.xml V_HSCV_LDA-1.0.xml W_HSCV_LDA-1.0.xml Xe_HSCV_LDA-1.2.xml Yb_HSCV_LDA-1.0.xml Y_HSCV_LDA-1.0.xml Zn_HSCV_LDA-1.0.xml Zr_HSCV_LDA-1.1.xml; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[6]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv/lda'
Making check in pbe
gmake[6]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv/pbe'
for f in Ac_HSCV_PBE-1.0.xml Ag_HSCV_PBE-1.0.xml Al_HSCV_PBE-1.0.xml Ar_HSCV_PBE-1.0.xml As_HSCV_PBE-1.0.xml At_HSCV_PBE-1.0.xml Au_HSCV_PBE-1.0.xml Ba_HSCV_PBE-1.0.xml B_HSCV_PBE-1.0.xml Bi_HSCV_PBE-1.0.xml Br_HSCV_PBE-1.0.xml Ca_HSCV_PBE-1.0.xml Cd_HSCV_PBE-1.0.xml Ce_HSCV_PBE-1.0.xml C_HSCV_PBE-1.0.xml Cl_HSCV_PBE-1.0.xml Co_HSCV_PBE-1.1.xml Cr_HSCV_PBE-1.0.xml Cs_HSCV_PBE-1.0.xml Cu_HSCV_PBE-1.0.xml D_HSCV_PBE-1.0.xml Dy_HSCV_PBE-1.0.xml Er_HSCV_PBE-1.0.xml Eu_HSCV_PBE-1.0.xml Fe_HSCV_PBE-1.0.xml F_HSCV_PBE-1.0.xml Fr_HSCV_PBE-1.0.xml Ga_HSCV_PBE-1.0.xml Gd_HSCV_PBE-1.0.xml Ge_HSCV_PBE-1.0.xml He_HSCV_PBE-1.0.xml Hf_HSCV_PBE-1.1.xml Hg_HSCV_PBE-1.0.xml H_HSCV_PBE-1.0.xml Ho_HSCV_PBE-1.0.xml I_HSCV_PBE-1.0.xml In_HSCV_PBE-1.0.xml Ir_HSCV_PBE-1.1.xml K_HSCV_PBE-1.0.xml Kr_HSCV_PBE-1.0.xml La_HSCV_PBE-1.0.xml Li_HSCV_PBE-1.0.xml Lu_HSCV_PBE-1.0.xml Mg_HSCV_PBE-1.0.xml Mn_HSCV_PBE-1.0.xml Mo_HSCV_PBE-1.0.xml Na_HSCV_PBE-1.0.xml Nb_HSCV_PBE-1.0.xml Nd_HSCV_PBE-1.0.xml Ne_HSCV_PBE-1.0.xml N_HSCV_PBE-1.0.xml Ni_HSCV_PBE-1.0.xml Np_HSCV_PBE-1.0.xml O_HSCV_PBE-1.0.xml Os_HSCV_PBE-1.0.xml Pa_HSCV_PBE-1.0.xml Pb_HSCV_PBE-1.0.xml Pd_HSCV_PBE-1.0.xml P_HSCV_PBE-1.0.xml Pm_HSCV_PBE-1.0.xml Po_HSCV_PBE-1.0.xml Pr_HSCV_PBE-1.0.xml Pt_HSCV_PBE-1.0.xml Pu_HSCV_PBE-1.0.xml Ra_HSCV_PBE-1.0.xml Rb_HSCV_PBE-1.0.xml Re_HSCV_PBE-1.0.xml Rh_HSCV_PBE-1.0.xml Rn_HSCV_PBE-1.0.xml Ru_HSCV_PBE-1.0.xml Sb_HSCV_PBE-1.0.xml Sc_HSCV_PBE-1.0.xml Se_HSCV_PBE-1.0.xml S_HSCV_PBE-1.0.xml Si_HSCV_PBE-1.0.xml Sm_HSCV_PBE-1.0.xml Sn_HSCV_PBE-1.0.xml Sr_HSCV_PBE-1.0.xml T_HSCV_PBE-1.0.xml Ta_HSCV_PBE-1.0.xml Tb_HSCV_PBE-1.0.xml Tc_HSCV_PBE-1.0.xml Te_HSCV_PBE-1.0.xml Th_HSCV_PBE-1.0.xml Ti_HSCV_PBE-1.0.xml Tl_HSCV_PBE-1.0.xml Tm_HSCV_PBE-1.0.xml U_HSCV_PBE-1.0.xml V_HSCV_PBE-1.0.xml W_HSCV_PBE-1.0.xml Xe_HSCV_PBE-1.0.xml Yb_HSCV_PBE-1.0.xml Y_HSCV_PBE-1.0.xml Zn_HSCV_PBE-1.0.xml Zr_HSCV_PBE-1.1.xml; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[6]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv/pbe'
gmake[6]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv'
gmake[6]: Nothing to be done for 'check-am'.
gmake[6]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv'
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/hscv'
Making check in sg15
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/sg15'
for f in Ag_ONCV_PBE-1.0.upf Al_ONCV_PBE-1.0.upf Ar_ONCV_PBE-1.1.upf As_ONCV_PBE-1.1.upf Au_ONCV_PBE-1.0.upf Ba_ONCV_PBE-1.0.upf Be_ONCV_PBE-1.0.upf Bi_ONCV_PBE-1.0.upf B_ONCV_PBE-1.0.upf Br_ONCV_PBE-1.0.upf Ca_ONCV_PBE-1.0.upf Cd_ONCV_PBE-1.0.upf Cl_ONCV_PBE-1.1.upf C_ONCV_PBE-1.0.upf C_ONCV_PBE-1.0.upf.spacing Co_ONCV_PBE-1.0.upf Cr_ONCV_PBE-1.0.upf Cs_ONCV_PBE-1.1.upf Cu_ONCV_PBE-1.0.upf D_ONCV_PBE-1.0.upf Fe_ONCV_PBE-1.0.upf F_ONCV_PBE-1.0.upf Ga_ONCV_PBE-1.0.upf Ge_ONCV_PBE-1.0.upf He_ONCV_PBE-1.0.upf Hf_ONCV_PBE-1.0.upf Hg_ONCV_PBE-1.0.upf H_ONCV_PBE-1.0.upf H_ONCV_PBE-1.0.upf.spacing In_ONCV_PBE-1.1.upf I_ONCV_PBE-1.1.upf Ir_ONCV_PBE-1.0.upf K_ONCV_PBE-1.0.upf Kr_ONCV_PBE-1.0.upf La_ONCV_PBE-1.0.upf Li_ONCV_PBE-1.0.upf Mg_ONCV_PBE-1.0.upf Mn_ONCV_PBE-1.0.upf Mo_ONCV_PBE-1.0.upf Na_ONCV_PBE-1.0.upf Nb_ONCV_PBE-1.0.upf Ne_ONCV_PBE-1.0.upf Ni_ONCV_PBE-1.0.upf N_ONCV_PBE-1.0.upf N_ONCV_PBE-1.0.upf.spacing O_ONCV_PBE-1.0.upf Os_ONCV_PBE-1.0.upf Pb_ONCV_PBE-1.0.upf Pd_ONCV_PBE-1.0.upf P_ONCV_PBE-1.1.upf Pt_ONCV_PBE-1.0.upf Rb_ONCV_PBE-1.0.upf Re_ONCV_PBE-1.0.upf Rh_ONCV_PBE-1.0.upf Ru_ONCV_PBE-1.0.upf Sb_ONCV_PBE-1.1.upf Sc_ONCV_PBE-1.0.upf Se_ONCV_PBE-1.1.upf Si_ONCV_PBE-1.1.upf Sn_ONCV_PBE-1.1.upf S_ONCV_PBE-1.1.upf Sr_ONCV_PBE-1.0.upf T_ONCV_PBE-1.0.upf Ta_ONCV_PBE-1.0.upf Tc_ONCV_PBE-1.0.upf Te_ONCV_PBE-1.1.upf Ti_ONCV_PBE-1.0.upf Tl_ONCV_PBE-1.0.upf V_ONCV_PBE-1.0.upf W_ONCV_PBE-1.0.upf Xe_ONCV_PBE-1.1.upf Y_ONCV_PBE-1.0.upf Zn_ONCV_PBE-1.0.upf Zr_ONCV_PBE-1.0.upf COPYING README.Octopus; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org/sg15'
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org'
gmake[5]: Nothing to be done for 'check-am'.
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org'
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/quantum-simulation.org'
Making check in pseudo-dojo.org
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org'
Making check in nc-sr-04_pbesol_standard
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbesol_standard'
for f in Ag.upf Al.upf Ar.upf As.upf Au.upf Ba.upf Be.upf Bi.upf Br.upf B.upf Ca.upf Cd.upf Cl.upf Co.upf Cr.upf Cs.upf C.upf Cu.upf D.upf Fe.upf F.upf Ga.upf Ge.upf He.upf Hf.upf Hg.upf H.upf In.upf Ir.upf I.upf Kr.upf K.upf La.upf Li.upf Lu.upf Mg.upf Mn.upf Mo.upf Na.upf Nb.upf Ne.upf Ni.upf N.upf Os.upf O.upf Pb.upf Pd.upf Po.upf Pt.upf P.upf Rb.upf Re.upf Rh.upf Rn.upf Ru.upf Sb.upf Sc.upf Se.upf Si.upf Sn.upf Sr.upf S.upf T.upf Ta.upf Tc.upf Te.upf Ti.upf Tl.upf V.upf W.upf Xe.upf Y.upf Zn.upf Zr.upf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbesol_standard'
Making check in nc-sr-04_pbesol_stringent
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbesol_stringent'
for f in Ag.upf Al.upf Ar.upf As.upf Au.upf Ba.upf Be.upf Bi.upf Br.upf B.upf Ca.upf Cd.upf Cl.upf Co.upf Cr.upf Cs.upf C.upf Cu.upf D.upf Fe.upf F.upf Ga.upf Ge.upf He.upf Hf.upf Hg.upf H.upf In.upf Ir.upf I.upf Kr.upf K.upf La.upf Li.upf Lu.upf Mg.upf Mn.upf Mo.upf Na.upf Nb.upf Ne.upf Ni.upf N.upf Os.upf O.upf Pb.upf Pd.upf Po.upf Pt.upf P.upf Rb.upf Re.upf Rh.upf Rn.upf Ru.upf Sb.upf Sc.upf Se.upf Si.upf Sn.upf Sr.upf S.upf T.upf Ta.upf Tc.upf Te.upf Ti.upf Tl.upf V.upf W.upf Xe.upf Y.upf Zn.upf Zr.upf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbesol_stringent'
Making check in nc-sr-04_pbe_standard
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbe_standard'
for f in Ag.upf Al.upf Al.upf.spacing Ar.upf Ar.upf.spacing As.upf Au.upf Ba.upf Be.upf Be.upf.spacing Bi.upf Br.upf B.upf B.upf.spacing Ca.upf Cd.upf Cl.upf Cl.upf.spacing Co.upf Cr.upf Cs.upf C.upf C.upf.spacing Cu.upf D.upf D.upf.spacing Fe.upf F.upf F.upf.spacing Ga.upf Ga.upf.spacing Ge.upf He.upf He.upf.spacing Hf.upf Hg.upf H.upf H.upf.spacing In.upf Ir.upf I.upf Kr.upf K.upf La.upf Li.upf Li.upf.spacing Lu.upf Mg.upf Mn.upf Mo.upf Na.upf Na.upf.spacing Nb.upf Ne.upf Ne.upf.spacing Ni.upf N.upf N.upf.spacing Os.upf O.upf O.upf.spacing Pb.upf Pd.upf Po.upf Pt.upf P.upf Rb.upf Re.upf Rh.upf Rn.upf Ru.upf Sb.upf Sc.upf Se.upf Si.upf Si.upf.spacing Sn.upf Sr.upf S.upf S.upf.spacing T.upf T.upf.spacing Ta.upf Tc.upf Te.upf Ti.upf Tl.upf V.upf W.upf Xe.upf Y.upf Zn.upf Zr.upf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbe_standard'
Making check in nc-sr-04_pbe_stringent
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbe_stringent'
for f in Ag.upf Al.upf Ar.upf As.upf Au.upf Ba.upf Be.upf Bi.upf Br.upf B.upf Ca.upf Cd.upf Cl.upf Co.upf Cr.upf Cs.upf C.upf Cu.upf D.upf Fe.upf F.upf Ga.upf Ge.upf He.upf Hf.upf Hg.upf H.upf In.upf Ir.upf I.upf Kr.upf K.upf La.upf Li.upf Lu.upf Mg.upf Mn.upf Mo.upf Na.upf Nb.upf Ne.upf Ni.upf N.upf Os.upf O.upf Pb.upf Pd.upf Po.upf Pt.upf P.upf Rb.upf Re.upf Rh.upf Rn.upf Ru.upf Sb.upf Sc.upf Se.upf Si.upf Sn.upf Sr.upf S.upf T.upf Ta.upf Tc.upf Te.upf Ti.upf Tl.upf V.upf W.upf Xe.upf Y.upf Zn.upf Zr.upf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pbe_stringent'
Making check in nc-sr-04_pw_standard
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pw_standard'
for f in Ag.upf Al.upf Ar.upf As.upf Au.upf Ba.upf Be.upf Bi.upf Br.upf B.upf Ca.upf Cd.upf Cl.upf Co.upf Cr.upf Cs.upf C.upf Cu.upf D.upf Fe.upf F.upf Ga.upf Ge.upf He.upf Hf.upf Hg.upf H.upf In.upf Ir.upf I.upf Kr.upf K.upf Li.upf Mg.upf Mn.upf Mo.upf Na.upf Nb.upf Ne.upf Ni.upf N.upf Os.upf O.upf Pb.upf Pd.upf Po.upf Pt.upf P.upf Rb.upf Re.upf Rh.upf Rn.upf Ru.upf Sb.upf Sc.upf Se.upf Si.upf Sn.upf Sr.upf S.upf T.upf Ta.upf Tc.upf Te.upf Ti.upf Tl.upf V.upf W.upf Xe.upf Y.upf Zn.upf Zr.upf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pw_standard'
Making check in nc-sr-04_pw_stringent
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pw_stringent'
for f in Ag.upf Al.upf Ar.upf As.upf Au.upf Ba.upf Be.upf Bi.upf Br.upf B.upf Ca.upf Cd.upf Cl.upf Co.upf Cr.upf Cs.upf C.upf Cu.upf D.upf Fe.upf F.upf Ga.upf Ge.upf He.upf Hf.upf Hg.upf H.upf In.upf Ir.upf I.upf Kr.upf K.upf Li.upf Mg.upf Mn.upf Mo.upf Na.upf Nb.upf Ne.upf Ni.upf N.upf Os.upf O.upf Pb.upf Pd.upf Po.upf Pt.upf P.upf Rb.upf Re.upf Rh.upf Rn.upf Ru.upf Sb.upf Sc.upf Se.upf Si.upf Sn.upf Sr.upf S.upf T.upf Ta.upf Tc.upf Te.upf Ti.upf Tl.upf V.upf W.upf Xe.upf Y.upf Zn.upf Zr.upf; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org/nc-sr-04_pw_stringent'
gmake[5]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org'
gmake[5]: Nothing to be done for 'check-am'.
gmake[5]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org'
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials/pseudo-dojo.org'
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials'
gmake[4]: Nothing to be done for 'check-am'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials'
for f in elements.dat; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/pseudopotentials'
Making check in recipes
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes'
Making check in da
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/da'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/da'
Making check in de
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/de'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/de'
Making check in en
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/en'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/en'
Making check in es
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/es'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/es'
Making check in eu
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/eu'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/eu'
Making check in it
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/it'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes/it'
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes'
gmake[4]: Nothing to be done for 'check-am'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes'
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/recipes'
Making check in util
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/util'
gmake[3]: Nothing to be done for 'check'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/util'
Making check in opencl
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/opencl'
for f in cl_global.h cl_complex.h cl_rtype.h cuda_compat.h vpsi.cl set_zero.cl set_one.cl operate.cl axpy.cl projector.cl pack.cl copy.cl mesh_batch_single.cl density.cl phase.cl phase_spiral.cl mesh_batch.cl rotate.cl points.cl trsm.cl mul.cl mesh_to_cube.cl convert.cl boundaries.cl ghost.cl forces.cl mod_sqr.cl uvw_to_xyz.cl curl.cl; do \
if [ ! -e $f -o $f -ot ./$f ]; then \
cp ./$f $f; \
fi \
done
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share/opencl'
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share'
gmake[3]: Nothing to be done for 'check-am'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share'
gmake[2]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/share'
gmake -C doc check
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc'
Making check in html
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html'
Making check in icons
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html/icons'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html/icons'
Making check in js
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html/js'
gmake[4]: Nothing to be done for 'check'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html/js'
Making check in vars
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html/vars'
../../../build/var2html.pl -b ../../..
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html/vars'
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html'
gmake[4]: Nothing to be done for 'check-am'.
gmake[4]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html'
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc/html'
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc'
gmake[3]: Nothing to be done for 'check-am'.
gmake[3]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc'
gmake[2]: Leaving directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/doc'
gmake -C testsuite check-short
gmake[2]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/testsuite'
gmake[3]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/testsuite'
gmake[4]: Entering directory '/disk-samsung/freebsd-ports/science/octopus/work/octopus-11.3/testsuite'
*****************************
Running octopus testsuite
*****************************
Note: Running the testsuite can take from several minutes
to more than two hours.
The environment variable OCT_TEST_NJOBS is not set. Octopus
will determine automatically an appropriate number of jobs:
- Found 8 processors that can be used.
- This is an OpenMP run. Each jobs uses all processors.
Running 1 jobs in parallel. Set environment variable OCT_TEST_NJOBS to adjust this.
Test groups: short-run
Starting test 1: components/01-derivatives_1d.test
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep seconds
usage: sleep secondsOS: FreeBSD 13