Forcing the use of all sequences in multiple sequence alignment (-a) mode
Dear Martin,
Thank you for creating lamassemble. I had a question regarding the possibility of forcing lamassemble to perform a multiple sequence alignment on sequences that diverge quite a lot, with large insertions or deletions between pairwise alignments. My aim is to see the differences in between sequences, rather than constructing a consensus in this application.
One warning I got was as follows: lamassemble: using 8 out of 458 sequences (linked by pairwise alignments)
Thank you,
Doruk
Edited by dbeyter