Unify the usage of the terms atoms, structure, configuration, occupation, decoration
Description
The usage of the terms configuration, atoms, structure, occupation and decoration should be unified throughout the code base. This includes docstrings, variable names, and tutorials.
- configuration, atoms, structure -> structure
- occupation, decoration -> occupation
Tasks
-
check usage of these terms -
monitor usage of occupation when considering chemical symbols vs atomic numbers vs species indices -
implement replacement as shown above
Demo
- tests pass
- the reviewer needs to check consistency