Turn analysis module into tutorial notebook

Subtasks

  • make analyze_data visible
  • remove analysis module
  • write notebook that illustrates how to analyze GPUMD runs
    • show how to read run.in, thermo.out, kappa.out files
    • show how to plot the results (elegantly)
    • show how to average over several thermal conductivity runs
    • TBD: show how to use databases for organizing the data
Edited by Paul Erhart
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