1. 10 Dec, 2018 1 commit
  2. 08 Dec, 2018 1 commit
  3. 27 Nov, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      New link to reproducible research added · 7357fc94
      Mohammad Akhlaghi authored
      David Valls-Gabaud kindly informed me of this page by Rob Hicks which
      describes the benefits of literate programming for doing reproducible
      research. So I have added a link to it in the
      `reproducible-science.html' page.
      7357fc94
  4. 23 Nov, 2018 1 commit
  5. 18 Nov, 2018 1 commit
  6. 30 Oct, 2018 2 commits
  7. 29 Oct, 2018 3 commits
    • Mohammad Akhlaghi's avatar
      Corrected address and page names to include IAC · c078efce
      Mohammad Akhlaghi authored
      In the previous commit, I had forgot to update my address in the
      pages. With this commit, the address line on all the pages has been
      corrected and also the "Lyon Observatory" part of the page titles has
      been changed to "Instituto de Astrofísica de Canarias".
      c078efce
    • Mohammad Akhlaghi's avatar
      Updated my institution to the IAC · 9f4dfa61
      Mohammad Akhlaghi authored
      I have recently moved to the IAC, so the introductory part of the
      webpage was updated to reflect this.
      
      I also added the IAC logo to the "Great thanks" part and remove the
      CNRS logo (because my Lyon funding was coming from ERC, through CNRS,
      not CNRS directly). I also added the MEXT logo, because they funded my
      masters and PhD in Tohoku University (Japan).
      9f4dfa61
    • Mohammad Akhlaghi's avatar
      Removed hard-wired public_html directory in upload script · 316456f3
      Mohammad Akhlaghi authored
      The `public_html' directory was hard-wired in the upload script,
      making it impossible to use if another directory is intended. It is
      now removed.
      316456f3
  8. 12 Sep, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added two MOOCs on reproducible science · 2cb27f33
      Mohammad Akhlaghi authored
      Alice Allen and David Valls-Gabaud introduced me to these two MOOCs
      (the INRIA one isn't actually done yet, but I guess once its finished,
      the full course will remain on the webpage).
      2cb27f33
  9. 05 Sep, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Research compendium concept discussed in reproducible science page · dc68f336
      Mohammad Akhlaghi authored
      Vicky Steeves recently introduced me to the concept of "Research
      compendia" (originally introduced by Gentleman and Temple Lang
      2004). So a link to that work and some related works (in
      `research-compendium.science') was added along with a discussion at
      the end of the "Implementation" section on the difference of this
      implementation with Rearch compendia.
      dc68f336
  10. 03 Sep, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added several links to Reproducible science page · 20349c37
      Mohammad Akhlaghi authored
      Alice Allen introduced me to an interesting article that came out in
      Physics today. It was a wonderful example of the importance of
      reproducibility in order to understand the methods and thus the
      results. In the comments to that paper, I also came up with a recent
      paper by Konrad Hinsen (whose papers I had read from +2 years ago),
      which I also added. He had also mentioned an early paper (from 1969)
      on this issue. A link to all these papers is now added.
      20349c37
  11. 24 Aug, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added link to ASU library's open science page · 9a81766b
      Mohammad Akhlaghi authored
      David Valls-Gabaud kindly introduced me to the ASU Library's open
      science page which contains many useful links regarding reproducible
      science. To allow links to similar pages, an "Other related pages"
      section was added.
      9a81766b
  12. 23 Aug, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      New data aquisition section to reproducible science page · 84d770e3
      Mohammad Akhlaghi authored
      This week's Nature had several nice articles on reproducibility, so I
      had the chance to add some interesting points to the reproducible
      science page.
      
      The main thing was adding a discussion on reproducibile data
      aquisition, with a link to `protocol.io' which helps in this
      step. Also, in Nature's toolkit section, there was a nice general
      discussion on how to make your work reproducible, so I added that link
      to the similar attempts section.
      84d770e3
  13. 06 Aug, 2018 1 commit
  14. 02 Aug, 2018 2 commits
  15. 28 Jul, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added Kulkarni et al 2018 to reproducible papers · 811f4b7a
      Mohammad Akhlaghi authored
      While reviewing yesterday's list of arXiv papers, I noticed the paper
      by Kulkarni et al. (arXiv: 1807.09774), where they had put all the
      code to derive their results in a Git repository and put a link to it
      in the arXiv comments.
      811f4b7a
  16. 24 Jul, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added new National Academies report on Open Science · 7db8ef00
      Mohammad Akhlaghi authored
      The National academies of sciences, engineering and medicine recently
      published a very complete report regarding "Open science". So a link
      was added within the description of the reproducible science page.
      
      David Valls-Gabaud kindly informed me about this report.
      7db8ef00
  17. 25 Jun, 2018 4 commits
  18. 16 Jun, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Critical article on exames added to suggested readings · feda63e9
      Mohammad Akhlaghi authored
      I saw this nice article by Simon Jenkins in the Guardian today
      regarding a criticim of exams and in particular maths exams. I
      mentions some points really nicely, so I thought it would be good to
      have it in the collection of suggested readings.
      feda63e9
  19. 06 Jun, 2018 2 commits
    • Mohammad Akhlaghi's avatar
      Minor spell check and edit in last commit · 4ed92d55
      Mohammad Akhlaghi authored
      I found a few typos and made the text more clear in the
      "Non-reproducible papers" section of `reproducible-science.html'.
      4ed92d55
    • Mohammad Akhlaghi's avatar
      Nice analogy and non-reproducible papers added to discussion · b1456383
      Mohammad Akhlaghi authored
      A nice analogy with the quality of English language in journals was
      added to the `reproducible-science.html' page. Also, Peter Mitchell
      kindly pointed me to an interesting non-reproducible paper he found
      today in Nature. So To make such cases also clear (how many people
      strongly resist an open view to science), I also added a list of such
      cases to this page.
      b1456383
  20. 17 May, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Nature's how to build a healthy lab collection in suggested readings · b2e38134
      Mohammad Akhlaghi authored
      The collection of articles in Nature this week on "How to build a
      healthy lab" were very interesting for me, so I thought of adding them
      in the suggested reading. They also had some nice pictures, so I also
      added three of the nice ones under the description (copied from the
      small version of the images).
      b2e38134
  21. 28 Apr, 2018 1 commit
  22. 04 Apr, 2018 1 commit
  23. 14 Mar, 2018 1 commit
  24. 09 Mar, 2018 1 commit
  25. 08 Mar, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added Nature's new policy regarding software · 5d14c332
      Mohammad Akhlaghi authored
      In this week's edition of Nature, I saw their announcement on their
      new policy towards software and code in the papers they publish. This
      was exciting news, so I added it to the page describing the approach
      to reproducible science.
      5d14c332
  26. 01 Mar, 2018 1 commit
  27. 28 Feb, 2018 1 commit
    • Mohammad Akhlaghi's avatar
      Added an article on science and the reformation · 66f0c726
      Mohammad Akhlaghi authored
      I saw this article in the October 26th edition of Nature and thought
      it would be good to review it in the suggested readings. Although as
      is clear from my review, I am critical to many aspects of it, I found
      the evidence that was provided at the start more interesting and
      thought it is also necessary to discuss articles I don't agree with
      (and why).
      66f0c726
  28. 21 Feb, 2018 1 commit
  29. 19 Feb, 2018 1 commit
  30. 18 Feb, 2018 1 commit
  31. 17 Feb, 2018 2 commits