Updating TODO

parent e6858f5d
---------------------------------------------------------------------------------------------------------------------------------------------
TODO list
---------------------------------------------------------------------------------------------------------------------------------------------
Paper:
-TODO: change the package so that it extracts to a directory
-Finish dbgwas-performance-study and runs on pyseer, HAWK and DBGWAS
-Put S1 online, and increment it to be a user-manual
-Changed all mentions of -nc_db and -pt_db to -nc-db and -pt-db in the text;
-https://mail.google.com/mail/u/0/#inbox/16493fde8c69169a
Binary 2 continuous phenotype:
-Step1: Accept continuous phenotype
-Step2: integrate it
-Step3:
-Color legend:
-Legend: -> Estimated Effect
-Pheno0: true minimum value
-Pheno1: true maximum value
-For the table, we replace Pheno0/Pheno1 -> Pheno <= Threshold and > Threshold
-Threshold by default is 0, but should be a parameter
-Step 3 should know and display the threshold
Step1:
-Maf filter
-Remove nodes with a given AF
-Put in the docs that we count from genome assembly
-Remove the filter that removes the genomes with missing phenotypes
Step2:
-parameter: only run step1
-customized step2 (script to run is a parameter, and we give all files to the scripts)
-pyseer Step2
-Other types of analysis
-no analysis, fixed effect
-bugwas bug
Step3:
-Layout with alongated nodes like Bandage
Continuous Genotype (frequencies):
-Step1:
-Parameter that is binary or continuous (frequency) genotype
-Step3:
-Always binarized?
-Frequencies Alelles/Counts
Label predicting
Next release (v0.5.2 ETA 31/05/2018):
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment