Updating tests/test_DBGWAS_on_pseudomonas_aeruginosa.sh

parent 0714ad11
......@@ -5,7 +5,7 @@ wget https://www.dropbox.com/s/0g1llvdbfv1jys6/pseudomonas_aeruginosa_full_datas
unzip pseudomonas_aeruginosa_full_dataset.zip
wget https://www.dropbox.com/s/mt3g4oh0bt5jwmr/Resistance_DB_for_DBGWAS.fasta?dl=1 -O Resistance_DB_for_DBGWAS.fasta
wget https://www.dropbox.com/s/9y1p0yw918ips6k/uniprot_sprot_bacteria_for_DBGWAS.fasta?dl=1 -O uniprot_sprot_bacteria_for_DBGWAS.fasta
./DBGWAS -strains pseudomonas_aeruginosa_full_dataset/strains -newick pseudomonas_aeruginosa_full_dataset/strains.newick -nc_db Resistance_DB_for_DBGWAS.fasta -pt_db uniprot_sprot_bacteria_for_DBGWAS.fasta
./DBGWAS -strains pseudomonas_aeruginosa_full_dataset/strains -newick pseudomonas_aeruginosa_full_dataset/strains.newick -nc-db Resistance_DB_for_DBGWAS.fasta -pt-db uniprot_sprot_bacteria_for_DBGWAS.fasta
#get the correct output
wget https://www.dropbox.com/s/jp24184zony1977/correct_output.zip?dl=1 -O correct_output.zip
......
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