Issue incorporating newick tree into analysis
Hello, I have successfully used DBGWAS without the Newick tree option, but I need to run it with the tree for lineage effects. I keep running into the error code:
Error in cdbg_get)tree(phylo = phylo, prefix=prefix, XX.ID = XX.ID[!is.na(y)], :
Error: Phylogeny sample names do not match the sample names of the SNP data Calls: cdbg_lin_loc -> cdbg_get_tree Execution halted. Fatal Error Executing R script --vanila
Exit status: 256.
When I check the Newick tree file, the sample names in the tree are the same the ones input on the input file with Samples/Path/Phenotype. Do you have any recommendations?