A suite of Python, R and Bash scripts for simulating RADseq/GBS for pooled GWAS, TWAS and GTWAS

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BACKUP_SCRIPTS_20170930 Loading commit data...
FstExploration.r Loading commit data...
GTWAS_POOL_RADseq_SIM.sh Loading commit data...
GWAS_individuals.r Loading commit data...
GWAlphaPlot-jefdited.r Loading commit data...
LICENSE Loading commit data...
README.md Loading commit data...
VCF.header Loading commit data...
assignPheno.py Loading commit data...
basisPlots_GLMvsGWAlpha.sh Loading commit data...
basisPlots_GWAS_ROC.py Loading commit data...
extractAlleleFreqPerPOOL.py Loading commit data...
fixREF.py Loading commit data...
generateSYNC.py Loading commit data...
plotLDandAlleleFreq.py Loading commit data...
plotLDandAlleleFreq.r Loading commit data...
plotROC.py Loading commit data...
poolingPheno.py Loading commit data...
setupUbuntuSERVER.sh Loading commit data...
simulateGEN_I.py Loading commit data...
simulateGEN_II.py Loading commit data...
simulateGenotypes.sh Loading commit data...
simulatePhenotypes.sh Loading commit data...
simulateRADseq.sh Loading commit data...
simulateTRANS1.py Loading commit data...
simulateTRANS2.py Loading commit data...
simulateTranscriptomes.sh Loading commit data...
simulateVAR.py Loading commit data...
vcf2sync.py Loading commit data...