Wrong path representation of circles, becomes apparent when duplicating/cloning or reopening
Steps to produce minimal file:
- Open Inkscape
- Create an ellipse/circle (not an arc/chord/etc.)
- Set a stroke to something thick and set linecap to square (Fill and Stroke > Stroke Style)
- Artefact may be visible (see below), definitely visible on reopen.
Steps to reproduce:
- Open specified Inkscape file.
- Change to outline mode (Ctrl+5)
- Select a circle of the template shapes.
- Assign it a stroke.
-- (Or select a circle with stroke)
- Duplicate it (Ctrl+D)
#### What happened?
A little rectangle corrupts the stroke/shape in the circle close node.

#### What should have happened?
Just duplicate it without any modification.
#### Notes
- I can solve it selecting all the duplicates affected with the `Select and transform objects` tool. Next select `Create circles, ellipses and arcs` tool and finally add a number to any of start/end entries so click on `Make the shape a whole ellipse, not arc or segment`.
- This does not occurs with new ellipses (into or out the file). Just with the ellipses in the file attached.
- `Stroke to path` does not solve the situation, but `Object to path` shows that the nodes are separated.

I would add that when "solving" as I mentioned above, this does not occurs.
#### Inkscape Version and Operating System:
- Inkscape Version: 1.0beta1 (58d3a45bae, 2019-10-02) (Snap version)
- Operating System: Debian 10
Example file.
issue