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Commit 19b8b6e4 authored by Gildas Le Corguillé's avatar Gildas Le Corguillé
Browse files

Fix qdd/3.1.2 - again

parent 4d8d8f9d
Pipeline #253829384 passed with stages
in 32 minutes and 6 seconds
......@@ -12,7 +12,7 @@ From: registry.gitlab.com/ifb-elixirfr/docker-images/mamba:0-6-4
%post
# dependencies
export PATH=/opt/conda/bin:$PATH
mamba install -y -q -c conda-forge -c bioconda -c default perl-bioperl-core blast clustalw primer3 repeatmasker
mamba install -y -q -c conda-forge -c bioconda -c default perl-bioperl-core blast clustalw primer3==2.4.1a repeatmasker
# Fix primer3 :
# Unable to open file /projet/fr2424/sib/lecorguille/miniconda3/envs/qdd_test/bin/primer3_config/stack.ds
......@@ -46,7 +46,7 @@ From: registry.gitlab.com/ifb-elixirfr/docker-images/mamba:0-6-4
%test
# Check dependencies
ls -d /opt/conda/bin/primer3_config
ls /opt/conda/bin/primer3_config/
# Check executables
export PATH=/opt/conda/bin:$PATH
export PATH=/usr/local/qdd/:$PATH
......@@ -61,4 +61,4 @@ From: registry.gitlab.com/ifb-elixirfr/docker-images/mamba:0-6-4
blastn -version | grep blastn
RepeatMasker | grep RepeatMasker
primer3_core -h 2>&1 | grep "This is primer3"
clustalw --ouhaich | grep CLUSTAL
\ No newline at end of file
clustalw --ouhaich | grep CLUSTAL
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