Merge requests · LPCDRP

Hhpred

hypotheticome.pub!96 · created Jan 16, 2020 by Afif Elghraoui
- Merged
updated Jan 16, 2020
Resolve "Vcf contains two identical variants for the same isolate in the same position"

pbhoover!7 · created Nov 15, 2019 by Sarah Ramirez-Busby
- Merged
updated Nov 15, 2019
Simple pseudo

pseudogenie!8 · created Nov 08, 2019 by Sarah Ramirez-Busby
- Merged
updated Nov 08, 2019
WIP: Pseudogenie 0.0

pseudogenie!7 · created Nov 08, 2019 by Sarah Ramirez-Busby
- Closed
updated Nov 08, 2019
WIP: Itasser review

hypotheticome.pub!95 · created Sep 23, 2019 by Afif Elghraoui
- Closed
- 1
updated Jan 16, 2020
Added 2 to the locus tag name in prokka no reference

hybran!3 · created Sep 16, 2019 by Sarah Ramirez-Busby master
- Merged
updated Sep 16, 2019
Annomerge cleanup

hybran!2 · created Sep 03, 2019 by Deepika Gunasekaran master
- Merged
- 1
updated Sep 06, 2019
Clustering

hybran!1 · created Jun 26, 2019 by Sarah Ramirez-Busby master
- Merged
updated Jun 26, 2019
pseudoGenieCAI seamless integration

pseudogenie!6 · created Jun 20, 2019 by Jamey
updated Jul 22, 2019
Pseudogenie cai

pseudogenie!5 · created Jun 17, 2019 by Jamey
- Closed
- 4
updated Jun 20, 2019
Two new scripts that analyze the blindspots phylogenetically.

illumina-blindspots.pub!2 · created May 07, 2019 by Scott Mitchell
- Merged
updated Mar 11, 2020
Within Lineage PE/PPE Distance

pe-ppe!2 · created Apr 18, 2019 by Scott Mitchell
- Merged
updated Apr 18, 2019
Working pseudo-genie-cai.py

pseudogenie!3 · created Apr 16, 2019 by Jamey
- Closed
updated Jun 17, 2019
Scottybranch

pangenome!14 · created Apr 15, 2019 by Scott Mitchell
- Merged
updated Apr 15, 2019
Dupe fixes

pangenome!13 · created Mar 26, 2019 by Jamey Counts are done
- Merged
updated Mar 26, 2019
WIP: Dupe fixes

pangenome!12 · created Mar 25, 2019 by Jamey
- Closed
updated Mar 25, 2019
Scottybranch

pangenome!11 · created Mar 25, 2019 by Scott Mitchell
- Merged
updated Mar 25, 2019
Scottybranch

pangenome!10 · created Mar 22, 2019 by Scott Mitchell
- Closed
updated Mar 25, 2019
Pseudogenie cai

pseudogenie!2 · created Feb 19, 2019 by Jamey
- Closed
updated Mar 12, 2019
Implement pseudo-genie-cai code

pseudogenie!1 · created Feb 19, 2019 by Jamey
- Merged
updated Feb 19, 2019