[Dot] dot killed
Ported Issue from Mantis Original ID: 2516 Referenced attachment(s) only available in original Mantis DB Reported By: chefarov
SEVERITY: CRITICAL Submitted: 2015-02-09 16:15:55
OS: LINUX
OS BUILD: 3.13.0-45-GENER
PLATFORM: UBUNTU X86_64
DESCRIPTION
SSPACE scaffolder came up with 3 .dot files (prefix_part1.dot, prefix_part2.dot, prefix_part3.dot).
I tried to use both only the part1.dot (final output), and the concatenated result from three files:
dot -Tps2 prefix.visual_scaffolds.part1.dot -v ? -o pic.ps &> dot.log
dot -Tps2 all.dot -v ? -o pic.ps &> all_dot.log
coming up to the same problem that the script is killed without a meaningfull output:
dot.log (head + tail):
dot - graphviz version 2.36.0 (20140111.2315)
libdir = "/usr/lib/graphviz"
Activated plugin library: libgvplugin_core.so.6
Using render: ps:core
Using device: ps2:ps:core
Activated plugin library: libgvplugin_dot_layout.so.6
Using layout: dot:dot_layout
The plugin configuration file:
/usr/lib/graphviz/config6
was successfully loaded.
render : cairo dot fig gd map pic pov ps svg tk vml vrml xdot
layout : circo dot fdp neato nop nop1 nop2 osage patchwork sfdp twopi
textlayout : textlayout
device : canon cmap cmapx cmapx_np dot eps fig gd gd2 gif gv imap imap_np ismap jpe jpeg jpg pdf pic plain plain-ext png pov ps ps2 svg svgz tk vml vmlz vrml wbmp x11 xdot xdot1.2 xdot1.4 xlib
loadimage : (lib) eps gd gd2 gif jpe jpeg jpg png ps svg xbm
fontname: "Times-Roman" resolved to: (ps:pango Nimbus Roman No9 L, REGULAR) (PangoCairoFcFont) "Nimbus Roman No9 L, Regular" /usr/share/fonts/type1/gsfonts/n021003l.pfb
network simplex: 4 nodes 3 edges maxiter=2147483647 balance=1
network simplex: 4 nodes 3 edges 0 iter 0.00 sec
network simplex: 5 nodes 4 edges maxiter=2147483647 balance=1
network simplex: 5 nodes 4 edges 0 iter 0.00 sec
.........
mincross: pass 2 iter 0 trying 0 cur_cross 0 best_cross 0
mincross: pass 2 iter 0 trying 0 cur_cross 0 best_cross 0
mincross: pass 2 iter 0 trying 0 cur_cross 0 best_cross 0
mincross ROOT: 0 crossings, 403.78 secs.
(thousands of mincross: 2 0 0 0 0 values repeating in the middle).
The all_dot.log file is similar. It's attached below
STEPS TO REPRODUCE
Described above
ADDITIONAL INFORMATION
graphviz 2.36.0-0ubuntu3.1 amd64