Names with "specific epithet" `bacterium` should be parsed as surrogates.
Names like
Aquificae bacterium
Acidobacteria bacterium
are not species. They are often from NCBI surrogates like
Acidobacteria bacterium 01QDG
Acidobacteria bacterium 01QDH_23S
Acidobacteria bacterium 13_1_20CM_2_55_15
Acidobacteria bacterium 13_1_20CM_2_57_8
Acidobacteria bacterium 13_1_20CM_2_59_6
Acidobacteria bacterium 13_1_20CM_2_60_10
Acidobacteria bacterium 13_1_20CM_2_65_9
Acidobacteria bacterium 13_1_20CM_2_68_14
Acidobacteria bacterium 13_1_20CM_2_68_7
Acidobacteria bacterium 13_1_20CM_3_53_8
Acidobacteria bacterium 13_1_20CM_3_58_11
Acidobacteria bacterium 13_1_20CM_3_58_5
Acidobacteria bacterium 13_1_20CM_4_56_7
Acidobacteria bacterium 13_1_20CM_4_57_11
Acidobacteria bacterium 13_1_20CM_4_58_6
Acidobacteria bacterium 13_1_20CM_56_12
Acidobacteria bacterium 13_1_20CM_58_21
Acidobacteria bacterium 13_1_20CM_65_14
Acidobacteria bacterium 13_1_40CM_2_56_11
Acidobacteria bacterium 13_1_40CM_2_56_5
Acidobacteria bacterium 13_1_40CM_2_59_4
Acidobacteria bacterium 13_1_40CM_2_60_7
Acidobacteria bacterium 13_1_40CM_2_64_6
Acidobacteria bacterium 13_1_40CM_2_68_10
Acidobacteria bacterium 13_1_40CM_2_68_5
Acidobacteria bacterium 13_1_40CM_3_55_6
Acidobacteria bacterium 13_1_40CM_3_56_11
Acidobacteria bacterium 13_1_40CM_3_59_4
Acidobacteria bacterium 13_1_40CM_3_65_5
Acidobacteria bacterium 13_1_40CM_4_56_10
Such names should be be parsed, but marked as 'surrogates' instead.
Edited by Dmitry Mozzherin