In MR https://gitlab.com/gitlab-org/gitlab-ee/merge_requests/14863 we
changed various prepend/include/extend lines to use the new X_if_ee
methods for injecting EE modules. Unfortunately, we forgot to take care
of a variety of lines due to the use of inaccurate patterns to find
This commit takes care of moving over the remaining lines, except for
any prepend lines in the ee/ directory as the changes are not needed
there (since this directory is only available in EE).