WIP: Separate options from arguments in several files

What does this MR do?

Adds -- to several commands to escape files that start with dashes.

Does this MR meet the acceptance criteria?

Conformity

• [-] Changelog entry
• [-] Documentation created/updated or follow-up review issue created
• Code review guidelines
• Merge request performance guidelines
• Style guides
• [-] Database guides
• [-] Separation of EE specific content

Closes #33697 (closed)