Support incremental delta updates on the offline malware advisory sync path
## Summary
The offline (air-gapped) malware advisory sync only consumes the PDS `full_dataset` (`/all`) snapshot. Online instances receive incremental `/delta` updates each cycle; offline instances do not — every refresh requires an admin to unpack a whole new `full_dataset`, which the connector then re-reads in full (resumable per shard, but not incremental).
## Current behaviour
- `Gitlab::PackageMetadata::Connector::MalwareOffline#data_after` reads only `<base_uri>/v3/<purl_type>/full_dataset/` (a `checkpoint.json` with `{"until": <epoch>}` plus `<hexshard>.tar.zst` shards). It yields data only on a first sync or when a **newer** `full_dataset` snapshot arrives (`checkpoint.sequence < snapshot_until`), and then re-reads the whole snapshot.
- `PackageMetadata::MalwareAdvisorySyncService#bulk_delta?` is gated to `storage_type == :pds`, so offline registries never take a delta path.
## Problem
As the advisory corpus grows, air-gapped customers must repeatedly transfer and re-ingest the entire dataset for each refresh instead of applying small incremental updates — a large-file transfer + ingestion cost (related to the streaming work in #602885). There is no incremental channel for offline today.
Malware is also the only offline data type without incremental updates. GLAD (advisory DB) and license offline sync go through the base `Gitlab::PackageMetadata::Connector::Offline`, which treats the bundle as an accumulating, sequenced file set (`<sequence>/<chunk>.ndjson`) and drops everything up to the checkpointed file, so a refresh ingests only the newly appended files. `MalwareOffline` overrides that with a single monolithic `full_dataset/` snapshot. This proposal brings malware offline in line with the other two.
## Proposal (iterable)
Add an offline delta channel:
- PDS exports a delta bundle for offline distribution (sequenced shards + checkpoint) alongside `full_dataset/`.
- The offline connector applies it incrementally after the initial full snapshot, advancing checkpoints like the PDS delta path.
- Sync routing lets offline registries use the delta path once past first sync.
## Implementation plan
**Scope.** Contained in `Gitlab::PackageMetadata::Connector::MalwareOffline`. No change to `MalwareAdvisorySyncService`: offline registries already take the individual path (`bulk_delta?` is PDS-only), which calls `connector.data_after(checkpoint)` — and that method decides full vs. delta. So the whole change lives in one connector.
**Vendor layout** under `<base_uri>/v3/<purl_type>/`:
- `full_dataset/` — unchanged: `checkpoint.json` (`{"until": <epoch>}`) + `<hexshard>.tar.zst` shards (the baseline; mirrors PDS `/all`).
- `delta/` — new: zero or more `<delta_epoch>.tar.zst` archives, each a zstd-tar of NDJSON chunks, named by its delta cursor (mirrors PDS `/delta`). Producing and packaging these for offline distribution is a PDS/CDot task, tracked separately.
**Routing** (mirrors the PDS connector's `first_sync? -> /all, else -> /delta`):
- First sync, or a newer `full_dataset` baseline dropped in, reads `full_dataset/` (existing logic, resumable per shard). Keeping the "newer baseline" precedence preserves today's re-snapshot workflow, so this is additive.
- Otherwise, read `delta/` archives whose cursor is greater than `checkpoint.sequence`, oldest first.
**Checkpointing.** Each delta archive's records carry `sequence = <delta cursor>` and `chunk = <per-entry chunk>`, so the sync's existing per-archive checkpoint advance moves `checkpoint.sequence` to each delta's cursor — identical to how PDS deltas advance. `first_sync?` flips to false once the baseline sets `sequence = until`, so later runs take the delta path on their own. An interrupted delta leaves the checkpoint at the previous cursor, so the whole archive is re-read next run (the upsert is idempotent).
**Out of scope / follow-ups.** The PDS-side delta export and the offline packaging of the `delta/` bundle; the streaming memory fix (#602885), which applies to both paths; specs (to be added with the change).
## Proposed diff (no specs)
```diff
diff --git a/ee/lib/gitlab/package_metadata/connector/malware_offline.rb b/ee/lib/gitlab/package_metadata/connector/malware_offline.rb
index 34ef80b2a1f3..75ceb3e32e8d 100644
--- a/ee/lib/gitlab/package_metadata/connector/malware_offline.rb
+++ b/ee/lib/gitlab/package_metadata/connector/malware_offline.rb
@@ -5,22 +5,40 @@ module PackageMetadata
module Connector
# Offline connector for malware advisories (v3), for air-gapped instances.
#
- # The vendor path is self-sufficient: an admin unpacks the PDS `full_dataset`
- # into `<base_uri>/v3/<purl_type>/full_dataset/`, which holds a
- # checkpoint.json ({"until": <epoch>}) and one `<hexshard>.tar.zst` per shard
- # (each a zstd-tar of a single NDJSON file). Unlike PDS, the shards are local
- # compressed files, not signed URLs; they are read straight from disk.
+ # The vendor path is self-sufficient: an admin unpacks the PDS distribution
+ # under `<base_uri>/v3/<purl_type>/`:
+ # - full_dataset/ -- a checkpoint.json ({"until": <epoch>}) and one
+ # <hexshard>.tar.zst per shard (the baseline snapshot; mirrors GET /all).
+ # - delta/ -- zero or more <delta_epoch>.tar.zst archives, each a zstd-tar
+ # of NDJSON chunks named by their delta cursor (mirrors GET /delta),
+ # applied incrementally after the baseline.
+ # Unlike PDS the archives are local compressed files, not signed URLs; they
+ # are read straight from disk.
#
# Inherits Offline only for #file_prefix (base_uri + version_format /
# registry_id); the file-walking is replaced here since the layout differs.
class MalwareOffline < Offline
FULL_DATASET_DIR = 'full_dataset'
+ DELTA_DIR = 'delta'
CHECKPOINT_FILENAME = 'checkpoint.json'
+ # First sync (or a newer full_dataset baseline) reads the snapshot;
+ # afterwards the vendored deltas are applied incrementally. Mirrors the
+ # PDS connector's first_sync? -> /all, else -> /delta routing.
+ def data_after(checkpoint)
+ if checkpoint.first_sync? || newer_full_dataset?(checkpoint)
+ full_dataset_files(checkpoint)
+ else
+ delta_files(checkpoint)
+ end
+ end
+
+ private
+
# Yields the vendor shards for the current snapshot, resuming from the last
# ingested shard so an interrupted air-gapped sync does not re-read the
# whole dataset. A fresh sync or a newer snapshot reads every shard.
- def data_after(checkpoint)
+ def full_dataset_files(checkpoint)
return [] unless File.exist?(checkpoint_path)
snapshot_until = full_dataset_until
@@ -33,25 +51,44 @@ def data_after(checkpoint)
chunk = shard_file.delete_suffix('.tar.zst').to_i(16)
next [] if resuming && chunk <= checkpoint.chunk.to_i
- files_from(shard_file, snapshot_until, chunk)
+ files_from(shard_file, full_dataset_dir, snapshot_until, chunk)
end
end
- private
+ # Yields the NDJSON records from each vendored delta newer than the
+ # checkpoint, oldest first. A delta archive is named by its unix-seconds
+ # cursor (matching PDS's `delta` timestamp) and holds flat NDJSON chunks;
+ # the sync advances the checkpoint to each delta's cursor as it ingests.
+ # An interrupted delta leaves the checkpoint at the previous cursor, so the
+ # whole archive is re-read next run (the upsert is idempotent).
+ def delta_files(checkpoint)
+ return [] unless File.directory?(delta_dir)
+
+ cursor = checkpoint.sequence.to_i
+ Dir.glob('*.tar.zst', base: delta_dir)
+ .filter_map do |file|
+ sequence = delta_sequence(file)
+ [sequence, file] if sequence && sequence > cursor
+ end
+ .sort_by(&:first)
+ .lazy.flat_map { |sequence, file| files_from(file, delta_dir, sequence) }
+ end
- # All shards share the snapshot `until`; the shard identifier (base-16) is
- # the checkpoint chunk (each shard archive holds a single NDJSON file).
+ # Reads a local .tar.zst (a full-dataset shard or a delta) and wraps each
+ # NDJSON entry as a data file. `chunk` is forced for full-dataset shards
+ # (one file per shard); deltas fall back to the per-file chunk from the
+ # archive, exactly as the PDS connector does.
#
- # TODO: File.binread loads the whole compressed shard into memory before
+ # TODO: File.binread loads the whole compressed archive into memory before
# TarZstReader decompresses it, also fully, into memory. Switch to zstd
# streaming -- open the file and stream through the reader.
# https://gitlab.com/gitlab-org/gitlab/-/work_items/602885
- def files_from(shard_file, snapshot_until, chunk)
- bytes = File.binread(File.join(full_dataset_dir, shard_file))
+ def files_from(archive, dir, sequence, chunk = nil)
+ bytes = File.binread(File.join(dir, archive))
reader = Connector::Archive::TarZstReader.new(bytes)
reader.each_entry.map do |entry|
- data_file_class.new(entry.io, snapshot_until, chunk)
+ data_file_class.new(entry.io, sequence, chunk || entry.chunk)
end
end
@@ -59,6 +96,25 @@ def shard_files
Dir.glob('*.tar.zst', base: full_dataset_dir).sort
end
+ # A delta archive is named `<unix-seconds>.tar.zst`; returns that cursor,
+ # or nil for a name that is not a plain integer so it is skipped.
+ def delta_sequence(filename)
+ Integer(filename.delete_suffix('.tar.zst'), 10)
+ rescue ArgumentError, TypeError
+ nil
+ end
+
+ # A fresh baseline -- a full_dataset whose `until` is newer than the
+ # checkpoint -- takes precedence over deltas, so an admin can re-baseline
+ # by dropping in a new snapshot; otherwise post-first-sync runs take the
+ # delta path.
+ def newer_full_dataset?(checkpoint)
+ return false unless File.exist?(checkpoint_path)
+
+ snapshot_until = full_dataset_until
+ !snapshot_until.nil? && checkpoint.sequence.to_i < snapshot_until
+ end
+
def full_dataset_until
parsed = ::Gitlab::Json::SafeParser.parse(File.read(checkpoint_path))
parsed['until'] if parsed.is_a?(Hash)
@@ -70,6 +126,10 @@ def full_dataset_dir
File.join(file_prefix, FULL_DATASET_DIR)
end
+ def delta_dir
+ File.join(file_prefix, DELTA_DIR)
+ end
+
def checkpoint_path
File.join(full_dataset_dir, CHECKPOINT_FILENAME)
end
```
## Related
- Offline path: #594758 (air-gapped auth/download), #613635 (offline checkpoint bug), #602885 (stream shards rather than loading whole `.tar.zst` into memory).
- Mirrors the online delta work: #607448 (bulk multi-registry `/delta`), #611958 (`use_all` catch-up).
- Base offline connector that already gives GLAD/licenses incremental refreshes: `ee/lib/gitlab/package_metadata/connector/offline.rb`.
issue
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