New SSH keys not being added to git user's authorized_keys file

Summary

When adding new SSH keys, they do not appear in the git user's authorized_keys file, despite the addition going through successfully and the "new key added to account" email being generated and sent.

Running gitlab-rake gitlab:shell:setup rebuilds the authorized_keys file with the new keys present, so this has been used as a workaround for the time being but is not ideal as we have many developers and can't keep running this every time a key is updated/added.

Gitlab Settings -> Network -> Performance Optimisation -> Write to Authorized Keys file is enabled.

Steps to reproduce

• Add new SSH key in user profile.
• Check contents of /var/opt/gitlab/.ssh/authorized_keys, note the key hasn't been added by checking the ID of the key vs the key-xxx string in the file.
• Attempting to push/pull/login with git@ via SSH results in rejection.

Example Project

Self-hosted Gitlab 12.9.0-ee.

What is the current bug behavior?

git user authorized_keys file not updated to reflect new keys

What is the expected correct behavior?

git user authorized_keys file updated to reflect new keys

Relevant logs and/or screenshots

Nothing in the logs to report.

Output of checks

Results of GitLab environment info

Expand for output related to GitLab environment info

[root@gitlab ~]# gitlab-rake gitlab:env:info
System information
System:
Proxy:		no
Current User:	git
Using RVM:	no
Ruby Version:	2.6.5p114
Gem Version:	2.7.10
Bundler Version:1.17.3
Rake Version:	12.3.3
Redis Version:	5.0.7
Git Version:	2.24.1
Sidekiq Version:5.2.7
Go Version:	unknown
GitLab information
Version:	12.9.0-ee
Revision:	073a4ba8016
Directory:	/opt/gitlab/embedded/service/gitlab-rails
DB Adapter:	PostgreSQL
DB Version:	10.12
URL:		https://gitlab.acme.co.uk
HTTP Clone URL:	https://gitlab.acme.co.uk/some-group/some-project.git
SSH Clone URL:	git@gitlab.acme.co.uk:some-group/some-project.git
Elasticsearch:	yes
Geo:		no
Using LDAP:	yes
Using Omniauth:	yes
Omniauth Providers:
GitLab Shell
Version:	12.0.0
Repository storage paths:

• default: /var/opt/gitlab/git-data/repositories GitLab Shell path: /opt/gitlab/embedded/service/gitlab-shell Git: /opt/gitlab/embedded/bin/git

Results of GitLab application Check

Expand for output related to the GitLab application check

Checking GitLab subtasks ...
Checking GitLab Shell ...
GitLab Shell: ... GitLab Shell version >= 12.0.0 ? ... OK (12.0.0)
Running /opt/gitlab/embedded/service/gitlab-shell/bin/check
Internal API available: OK
Redis available via internal API: OK
gitlab-shell self-check successful
Checking GitLab Shell ... Finished
Checking Gitaly ...
Gitaly: ... default ... OK
Checking Gitaly ... Finished
Checking Sidekiq ...
Sidekiq: ... Running? ... yes
Number of Sidekiq processes ... 1
Checking Sidekiq ... Finished
Checking Incoming Email ...
Incoming Email: ... Checking Reply by email ...
IMAP server credentials are correct? ... yes
Init.d configured correctly? ... skipped
MailRoom running? ... skipped
Checking Reply by email ... Finished
Checking Incoming Email ... Finished
Checking LDAP ...
LDAP: ... Server: ldapoffice
not verifying SSL hostname of LDAPS server 'xx.xx.xx.xx:636'
LDAP authentication... Success
LDAP users with access to your GitLab server (only showing the first 100 results)
User output sanitized. Found 100 users of 100 limit.
Checking LDAP ... Finished
Checking GitLab App ...
Git configured correctly? ... yes
Database config exists? ... yes
All migrations up? ... yes
Database contains orphaned GroupMembers? ... no
GitLab config exists? ... yes
GitLab config up to date? ... yes
Log directory writable? ... yes
Tmp directory writable? ... yes
Uploads directory exists? ... yes
Uploads directory has correct permissions? ... yes
Uploads directory tmp has correct permissions? ... yes
Init script exists? ... skipped (omnibus-gitlab has no init script)
Init script up-to-date? ... skipped (omnibus-gitlab has no init script)
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125/1598 ... yes
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125/1600 ... yes
125/1601 ... yes
526/1602 ... yes
380/1603 ... yes
347/1604 ... yes
366/1605 ... yes
254/1606 ... yes
254/1607 ... yes
420/1608 ... yes
366/1609 ... yes
125/1610 ... yes
526/1612 ... yes
366/1613 ... yes
125/1614 ... yes
125/1615 ... yes
469/1616 ... yes
369/1617 ... yes
459/1618 ... yes
159/1619 ... yes
59/1620 ... yes
108/1621 ... yes
125/1622 ... yes
63/1623 ... yes
333/1625 ... yes
366/1627 ... yes
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350/1630 ... yes
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44/1634 ... yes
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503/1641 ... yes
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447/1643 ... yes
63/1644 ... yes
63/1645 ... yes
7/1646 ... yes
63/1647 ... yes
453/1652 ... yes
6/1653 ... yes
37/1655 ... yes
218/1657 ... yes
218/1658 ... yes
357/1659 ... yes
196/1660 ... yes
350/1661 ... yes
6/1662 ... yes
63/1663 ... yes
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356/1666 ... yes
235/1667 ... yes
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125/1669 ... yes
222/1671 ... yes
63/1672 ... yes
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294/1675 ... yes
439/1676 ... yes
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95/1679 ... yes
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455/1688 ... yes
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543/1701 ... yes
125/1702 ... yes
6/1703 ... yes
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407/1705 ... yes
420/1706 ... yes
41/1707 ... yes
7/1708 ... yes
366/1710 ... yes
192/1711 ... yes
6/1712 ... yes
476/1713 ... yes
317/1714 ... yes
59/1715 ... yes
4/1716 ... yes
366/1717 ... yes
351/1718 ... yes
228/1719 ... yes
39/1720 ... yes
218/1722 ... yes
228/1723 ... yes
408/1724 ... yes
317/1725 ... yes
192/1726 ... yes
550/1727 ... yes
222/1728 ... yes
550/1729 ... yes
11/1730 ... yes
504/1731 ... yes
2/1733 ... yes
455/1734 ... yes
507/1735 ... yes
146/1736 ... yes
163/1737 ... yes
5/1738 ... yes
156/1739 ... yes
44/1740 ... yes
543/1741 ... yes
125/1742 ... yes
125/1744 ... yes
184/1745 ... yes
11/1746 ... yes
6/1747 ... yes
172/1748 ... yes
71/1751 ... yes
222/1752 ... yes
504/1753 ... yes
407/1754 ... yes
222/1756 ... yes
301/1758 ... yes
6/1759 ... yes
548/1760 ... yes
6/1761 ... yes
4/1762 ... yes
563/1763 ... yes
117/1764 ... yes
267/1765 ... yes
7/1766 ... yes
447/1767 ... yes
125/1768 ... yes
95/1769 ... yes
543/1770 ... yes
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556/1776 ... yes
366/1777 ... yes
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525/1780 ... yes
556/1781 ... yes
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6/1789 ... yes
366/1790 ... yes
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439/1792 ... yes
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507/1799 ... yes
400/1800 ... yes
400/1801 ... yes
73/1802 ... yes
420/1803 ... yes
436/1804 ... yes
125/1805 ... yes
5/1806 ... yes
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407/1808 ... yes
196/1809 ... yes
341/1811 ... yes
432/1812 ... yes
548/1813 ... yes
543/1814 ... yes
323/1815 ... yes
6/1816 ... yes
6/1817 ... yes
366/1818 ... yes
463/1819 ... yes
238/1820 ... yes
163/1821 ... yes
525/1822 ... yes
222/1823 ... yes
188/1824 ... yes
5/1825 ... yes
159/1831 ... yes
125/1832 ... yes
125/1833 ... yes
125/1834 ... yes
125/1835 ... yes
357/1837 ... yes
6/1839 ... yes
73/1840 ... yes
106/1842 ... yes
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117/1845 ... yes
71/1846 ... yes
573/1847 ... yes
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548/1852 ... yes
435/1853 ... yes
527/1854 ... yes
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39/1860 ... yes
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222/1867 ... yes
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459/1896 ... yes
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63/1900 ... yes
4/1901 ... yes
275/1902 ... yes
424/1903 ... yes
284/1904 ... yes
476/1905 ... yes
323/1906 ... yes
192/1907 ... yes
323/1908 ... yes
530/1909 ... yes
63/1910 ... yes
6/1911 ... yes
218/1912 ... yes
587/1914 ... yes
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6/1917 ... yes
439/1918 ... yes
254/1919 ... yes
366/1920 ... yes
587/1922 ... yes
521/1923 ... yes
284/1925 ... yes
223/1926 ... yes
6/1928 ... yes
323/1929 ... yes
93/1930 ... yes
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235/1932 ... yes
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350/1934 ... yes
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436/1936 ... yes
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38/1938 ... yes
45/1939 ... yes
6/1940 ... yes
543/1941 ... yes
506/1942 ... yes
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357/1944 ... yes
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573/1946 ... yes
366/1947 ... yes
587/1948 ... yes
366/1949 ... yes
272/1950 ... yes
59/1951 ... yes
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420/1954 ... yes
366/1955 ... yes
588/1956 ... yes
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254/1958 ... yes
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38/1960 ... yes
228/1961 ... yes
438/1962 ... yes
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435/1966 ... yes
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435/1981 ... yes
283/1982 ... yes
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438/1986 ... yes
192/1987 ... yes
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4/1989 ... yes
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551/1993 ... yes
504/1994 ... yes
588/1995 ... yes
419/1996 ... yes
380/1997 ... yes
41/1998 ... yes
38/1999 ... yes
408/2000 ... yes
222/2001 ... yes
117/2002 ... yes
228/2003 ... yes
435/2004 ... yes
228/2005 ... yes
551/2006 ... yes
6/2007 ... yes
611/2009 ... yes
284/2010 ... yes
504/2011 ... yes
588/2012 ... yes
611/2013 ... yes
188/2019 ... yes
555/2021 ... yes
504/2022 ... yes
61/2023 ... yes
284/2024 ... yes
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323/2028 ... yes
573/2029 ... yes
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462/2092 ... yes
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6/2110 ... yes
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6/2154 ... yes
41/2155 ... yes
573/2156 ... yes
577/2157 ... yes
6/2158 ... yes
163/2159 ... yes
Redis version >= 2.8.0? ... yes
Ruby version >= 2.5.3 ? ... yes (2.6.5)
Git version >= 2.22.0 ? ... yes (2.24.1)
Git user has default SSH configuration? ... yes
Active users: ... 215
Is authorized keys file accessible? ... yes
Elasticsearch version 5.6 - 6.x? ... yes (6.8.4)
Checking GitLab App ... Finished
Checking GitLab subtasks ... Finished