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Always touch examples/templates before reconfigure

What does this Merge Request do and why?

This MR fixes a problem where some config files were not being updated when running gdk reconfigure. !2204 (merged) introduced this regression by trying to quiet down the output when a diff is produced for protected files but inadvertently broke things 😞

Merge Request checklist

  • This change is backward compatible. If not, please include steps to communicate to our users.
  • Tests added for new functionality. If not, please raise Issue to follow-up.
  • Documentation added/updated, if needed.
  • gdk doctor test added, if needed.
  • Add the ~highlight label if this MR should be included in the CHANGELOG.md.

Closes #1355 (closed) #1351 (closed)

Edited by Ash McKenzie

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