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Commits (2)
......@@ -4,6 +4,13 @@ The `clean` and the `markduplicate` jars, operate on these generated BAM Files.
## Pre-processing
Step 1
Preprocess
/srv/data1/users/aroy/VLDB16DATA/fastq
FASTQ files compute-1-10
/state/partition3/aroy/gesall/data/fastq/60
Before running the jar we need to the raw FASTQ Files in a distributed manner across all machines as the process is highly memory intensive.
###TODO
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