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genenetwork
guix
Commits
1204258c
Commit
1204258c
authored
Dec 14, 2018
by
Pjotr Prins
Browse files
CWL fixes
parent
89f9df6c
Changes
4
Hide whitespace changes
Inline
Side-by-side
gnu/packages/check.scm
View file @
1204258c
...
...
@@ -765,14 +765,14 @@ supports coverage of subprocesses.")
(
define-public
python-pytest-mock
(
package
(
name
"python-pytest-mock"
)
(
version
"1.
6.3
"
)
(
version
"1.
10.0
"
)
(
source
(
origin
(
method
url-fetch
)
(
uri
(
pypi-uri
"pytest-mock"
version
))
(
sha256
(
base32
"
075v7b2wm5f839r1a30n21wfk5rfqp3d05q7zb9jlb2wmxki23cj
"
))))
"
1h6lgpmsvs9s8j2s80v06f9f3iaw1n1rc51mbrxk1f12sw4q56nq
"
))))
(
build-system
python-build-system
)
(
native-inputs
`
((
"python-setuptools-scm"
,
python-setuptools-scm
)))
...
...
gnu/packages/python-web.scm
View file @
1204258c
...
...
@@ -1732,7 +1732,7 @@ provide an easy-to-use Python interface for building OAuth1 and OAuth2 clients."
(
define-public
python-cachecontrol
(
package
(
name
"python-cachecontrol"
)
(
version
"0.11.
6
"
)
(
version
"0.11.
7
"
)
(
source
(
origin
(
method
url-fetch
)
...
...
@@ -1743,20 +1743,11 @@ provide an easy-to-use Python interface for building OAuth1 and OAuth2 clients."
(
file-name
(
string-append
name
"-"
version
".tar.gz"
))
(
sha256
(
base32
"
0yj60d0f69a2l8p7y86k4zhzzm6rnxpq74sfl240pry9l0lfw2vw
"
))))
"
1yfhwihx1b1xjsx0r19va2m0r2s91im03x4d7pwzp87368f2lkkp
"
))))
(
build-system
python-build-system
)
(
arguments
`
(
#
:phases
(
modify-phases
%standard-phases
(
replace
'check
(
lambda
_
;; Drop test that requires internet access.
(
delete-file
"tests/test_regressions.py"
)
(
setenv
"PYTHONPATH"
(
string-append
(
getcwd
)
"/build/lib:"
(
getenv
"PYTHONPATH"
)))
(
invoke
"py.test"
"-vv"
)
#t
)))))
'
(
;; Many tests fail because they require cherrypy with a host of dependencies
#
:tests?
#f
))
(
native-inputs
`
((
"python-pytest"
,
python-pytest
)
(
"python-redis"
,
python-redis
)
...
...
gnu/packages/python.scm
View file @
1204258c
...
...
@@ -938,14 +938,14 @@ version identifier.")
(define-public python-setuptools
(package
(name "python-setuptools")
(version "
31.0.0
")
(version "
40.6.3
")
(source
(origin
(method url-fetch)
(uri
(pypi-uri "setuptools" version)
)
(uri
"https://files.pythonhosted.org/packages/37/1b/b25507861991beeade31473868463dad0e58b1978c209de27384ae541b0b/setuptools-40.6.3.zip"
)
(sha256
(base32
"
0ypybh4hx3bv4vhg2dc74xpj1g56ggnaffm87k4abhwjwq6wq608
"))
"
1y085dnk574sxw9aymdng9gijvrsbw86hsv9hqnhv7y4d6nlsirv
"))
(modules '((guix build utils)))
(snippet
'(begin
...
...
gnu/packages/rdf.scm
View file @
1204258c
...
...
@@ -297,7 +297,7 @@ ideal (e.g. in LV2 implementations or embedded applications).")
(
define-public
python-rdflib
(
package
(
name
"python-rdflib"
)
(
version
"4.
1
.2"
)
(
version
"4.
2
.2"
)
(
source
(
origin
(
method
url-fetch
)
...
...
@@ -305,12 +305,9 @@ ideal (e.g. in LV2 implementations or embedded applications).")
"https://pypi.python.org/packages/source/r/rdflib/rdflib-"
version
".tar.gz"
))
(
patches
;; The patch has no effect under Python 3.
(
search-patches
"python2-rdflib-drop-sparqlwrapper.patch"
))
(
sha256
(
base32
"0
kvaf332cqbi47rqzlpdx4mbkvw12mkrzkj8n9l19wk713d4py9w
"
))))
"0
398c714znnhaa2x7v51b269hk20iz073knq2mvmqp2ma92z27fs
"
))))
(
build-system
python-build-system
)
(
arguments
'
(
;; FIXME: Three test failures. Try uncommenting the below next update.
...
...
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