Commit 013b61e1 authored by fvafrcu's avatar fvafrcu

prepare release

parent 444fb6d4
Pipeline #104318204 passed with stages
in 17 minutes and 4 seconds
Type: Package
Package: HandTill2001
Title: Multiple Class Area under ROC Curve
Version: 0.2-12.9000
Version: 1.0.0
[email protected]:
person(given = "Andreas Dominik",
family = "Cullmann",
......
# HandTill2001 0.2-12.9000
# HandTill2001 1.0.0
* Changed testing from assertError() and assertWarning() adopted from package
`Matrix` to formal testing via `testthat`.
* Streamlined package layout using `packager`.
* Added a `NEWS.md` file to track changes to the package.
......
Dear CRAN Team,
this is a resubmission of package 'HandTill2001'. I have added the following changes:
* Changed testing from assertError() and assertWarning() adopted from package
`Matrix` to formal testing via `testthat`.
* Streamlined package layout using `packager`.
* Added a `NEWS.md` file to track changes to the package.
Please upload to CRAN.
Best, Andreas Dominik
# Package HandTill2001 0.2-12.9000
# Package HandTill2001 1.0.0
## Test environments
- R Under development (unstable) (2019-12-18 r77593)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Devuan GNU/Linux ascii
0 errors | 1 warning | 1 note
0 errors | 0 warnings | 1 note
- win-builder (devel)
......@@ -7,5 +7,5 @@
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* re-saving tabular files
* building ‘HandTill2001_0.2-12.9000.tar.gz’
* building ‘HandTill2001_1.0.0.tar.gz’
......@@ -5,12 +5,10 @@
* using options ‘--run-donttest --as-cran’
* checking for file ‘HandTill2001/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HandTill2001’ version ‘0.2-12.9000’
* this is package ‘HandTill2001’ version ‘1.0.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Andreas Dominik Cullmann <[email protected]>’
Version contains large components (0.2-12.9000)
New maintainer:
Andreas Dominik Cullmann <[email protected]>
Old maintainer(s):
......@@ -32,11 +30,7 @@ Old maintainer(s):
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... WARNING
Vignettes with missing or empty \VignetteIndexEntry:
consensus_auc.Rnw
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
......@@ -78,4 +72,4 @@ See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 1 NOTE
Status: 1 NOTE
......@@ -7,6 +7,6 @@ Loading HandTill2001
/home/qwer/git/cyclops/fvafrcu/HandTill2001/R/HandTill2001-package.R: line 29 counts 87 characters.>
Warning messages:
1: In getPackageName(where) :
Created a package name, ‘2019-12-19 11:17:48’, when none found
Created a package name, ‘2019-12-19 11:50:12’, when none found
2: In getPackageName(where) :
Created a package name, ‘2019-12-19 11:17:48’, when none found
Created a package name, ‘2019-12-19 11:50:12’, when none found
checking index information ... WARNING
Vignettes with missing or empty \VignetteIndexEntry:
consensus_auc.Rnw
See sections ‘The INDEX file’ and ‘Package subdirectories’ in the
‘Writing R Extensions’ manual.
checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Andreas Dominik Cullmann <[email protected]>’
Version contains large components (0.2-12.9000)
New maintainer:
Andreas Dominik Cullmann <[email protected]>
Old maintainer(s):
......
checking for file ‘/tmp/RtmpKQDl8N/remotes5a281603893b/HandTill2001/DESCRIPTION’ ... ✔ checking for file ‘/tmp/RtmpKQDl8N/remotes5a281603893b/HandTill2001/DESCRIPTION’
checking for file ‘/tmp/RtmpBvnA6u/remotes365b2e687318/HandTill2001/DESCRIPTION’ ... ✔ checking for file ‘/tmp/RtmpBvnA6u/remotes365b2e687318/HandTill2001/DESCRIPTION’
─ preparing ‘HandTill2001’:
✔ checking DESCRIPTION meta-information
✔ checking vignette meta-information
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘HandTill2001_0.2-12.9000.tar.gz’
─ building ‘HandTill2001_1.0.0.tar.gz’
=========================
= Bitte haben Sie Spass. =
......@@ -42,4 +42,5 @@
** testing if installed package keeps a record of temporary installation path
* DONE (HandTill2001)
Adding ‘HandTill2001_1.0.0_R_x86_64-pc-linux-gnu.tar.gz’ to the cache
[1] TRUE
......
......@@ -4,10 +4,10 @@
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘HandTill2001_0.2-12.9000.tar.gz’
─ building ‘HandTill2001_1.0.0.tar.gz’
Running /home/qwer/svn/R/r-devel/build/bin/R CMD INSTALL \
/tmp/Rtmp3EpDZa/HandTill2001_0.2-12.9000.tar.gz --install-tests
/tmp/RtmpXhgt6Y/HandTill2001_1.0.0.tar.gz --install-tests
* installing to library ‘/home/qwer/svn/R/r-devel/build/library’
* installing *source* package ‘HandTill2001’ ...
** using staged installation
......@@ -31,10 +31,10 @@
─ checking for LF line-endings in source and make files
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘HandTill2001_0.2-12.9000.tar.gz’
─ building ‘HandTill2001_1.0.0.tar.gz’
Running /usr/lib/R/bin/R CMD INSTALL \
/tmp/Rtmpi8HkbV/HandTill2001_0.2-12.9000.tar.gz --install-tests
/tmp/RtmpzdVRTy/HandTill2001_1.0.0.tar.gz --install-tests
* installing to library ‘/home/qwer/R/x86_64-pc-linux-gnu-library/3.3’
* installing *source* package ‘HandTill2001’ ...
** R
......
NO COPY: tests/testthat/test-auc.R:6:45: style: Trailing whitespace is superfluous.
true = "1")
^
NO COPY: tests/testthat/test-auc.R:15:74: style: Trailing whitespace is superfluous.
NO COPY: tests/testthat/test-auc.R:14:74: style: Trailing whitespace is superfluous.
object <- HandTill2001::multcap(response = ht01.multipleclass$observed,
^
NO COPY: tests/testthat/test-auc.R:16:77: style: Trailing whitespace is superfluous.
NO COPY: tests/testthat/test-auc.R:15:77: style: Trailing whitespace is superfluous.
predicted = as.matrix(ht01.multipleclass[,
^
NO COPY: tests/testthat/test-auc.R:22:1: style: Trailing blank lines are superfluous.
^
NO COPY: tests/testthat/test-classes.R:9:1: style: lines should not be more than 80 characters.
expectation <- methods::new("bincap", predicted = c(0.26184254779443, 0.00380913410144982,
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
......
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/html4/transitional.dtd">
<html><head><title>RUNIT TEST PROTOCOL--Thu Dec 19 11:18:56 2019</title>
<html><head><title>RUNIT TEST PROTOCOL--Thu Dec 19 11:53:53 2019</title>
</head>
<body><h1 TRUE>RUNIT TEST PROTOCOL--Thu Dec 19 11:18:56 2019</h1>
<body><h1 TRUE>RUNIT TEST PROTOCOL--Thu Dec 19 11:53:53 2019</h1>
<p>Number of test functions: 1</p>
<p>Number of errors: 0</p>
<p>Number of failures: 0</p>
......
RUNIT TEST PROTOCOL -- Thu Dec 19 11:18:56 2019
RUNIT TEST PROTOCOL -- Thu Dec 19 11:53:53 2019
***********************************************
Number of test functions: 1
Number of errors: 0
......
DESCRIPTION does not contain 'Language' field. Defaulting to 'en-US'.
WORD FOUND IN
assertError NEWS.md:3
assertWarning NEWS.md:3
bincap auc-methods.Rd:16
DOI auc-methods.Rd:70
HandTill2001-package.Rd:31
......@@ -28,6 +30,7 @@ RStudio README.md:8,9
README.Rmd:8,9
Springer ht01.multipleclass.Rd:43
ht01.twoclass.Rd:39
testthat NEWS.md:3
th ht01.multipleclass.Rd:43
ht01.twoclass.Rd:39
Venables ht01.multipleclass.Rd:32,42
......
......@@ -8,15 +8,3 @@ Loaded mda 0.4-10
Moving consensus_auc.pdf, consensus_auc.R to doc/
Copying consensus_auc.Rnw to doc/
Building vignette index
processing file: /home/qwer/git/cyclops/fvafrcu/HandTill2001/vignettes/consensus_auc.Rnw
| | | 0% | |... | 4% | |..... | 7% | |........ | 11% | |.......... | 15% | |............. | 19% | |................ | 22% | |.................. | 26% | |..................... | 30% | |....................... | 33% | |.......................... | 37% | |............................. | 41% | |............................... | 44% | |.................................. | 48% | |.................................... | 52% | |....................................... | 56% | |......................................... | 59% | |............................................ | 63% | |............................................... | 67% | |................................................. | 70% | |.................................................... | 74% | |...................................................... | 78% | |......................................................... | 81% | |............................................................ | 85% | |.............................................................. | 89% | |................................................................. | 93% | |................................................................... | 96% | |......................................................................| 100%
output file: ./inst/doc/consensus_auc.Rnw
[[1]]
[1] "./inst/doc/consensus_auc.Rnw"
Warning message:
In remind_sweave(if (in.file) input, sweave_lines) :
It seems you are using the Sweave-specific syntax in line(s) 8, 9, 10, 20, 27, 36, 50, 56, 66, 81, 89, 103, 117, 125, 131, 136; you may need Sweave2knitr("/home/qwer/git/cyclops/fvafrcu/HandTill2001/vignettes/consensus_auc.Rnw") to convert it to knitr
......@@ -9,14 +9,12 @@ testthat::test_that("binary", {
testthat:::expect_equal(result, expectation)
})
# testthat::test_that("multiple", {
# data(ht01.multipleclass, package = "HandTill2001")
# object <- HandTill2001::multcap(response = ht01.multipleclass$observed,
# predicted = as.matrix(ht01.multipleclass[,
# levels(ht01.multipleclass$observed)]))
# result <- HandTill2001::auc(object)
# expectation <- 0.947211779448622
# testthat:::expect_equal(result, expectation)
# })
testthat::test_that("multiple", {
data(ht01.multipleclass, package = "HandTill2001")
object <- HandTill2001::multcap(response = ht01.multipleclass$observed,
predicted = as.matrix(ht01.multipleclass[,
levels(ht01.multipleclass$observed)]))
result <- HandTill2001::auc(object)
expectation <- 0.947211779448622
testthat:::expect_equal(result, expectation)
})
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